Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_O21
(926 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 34 0.033
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.53
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 1.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.8
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 3.8
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 26 6.6
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 26 6.6
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 6.6
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At... 26 8.7
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 26 8.7
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 8.7
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.9 bits (74), Expect = 0.033
Identities = 31/126 (24%), Positives = 47/126 (37%), Gaps = 6/126 (4%)
Frame = +1
Query: 565 APPXQAXTKNRRSSXKVAXTPTGTIKIPX---RFPPGKLPRAALP-VPDPARLPGIPGPP 732
AP + + S P+G +P PP P A+P VP P+ P +P P
Sbjct: 1068 APSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPS 1127
Query: 733 FSPLREXVXAFSPXLTLLGISVXGVKVRSA--PKPGACVAPNPPXQPRTXXRPYPGXYSX 906
+ V + +P + ++ V S P P VA P P + P P +
Sbjct: 1128 VAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAG 1187
Query: 907 LXXPPP 924
+ PP
Sbjct: 1188 VPPVPP 1193
Score = 28.7 bits (61), Expect = 1.2
Identities = 25/97 (25%), Positives = 34/97 (35%), Gaps = 1/97 (1%)
Frame = +1
Query: 637 IKIPXRFPPGKLPRAALPVP-DPARLPGIPGPPFSPLREXVXAFSPXLTLLGISVXGVKV 813
I +P PP +P + PVP + P P P +P E +P + G+
Sbjct: 1034 IPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIP- 1092
Query: 814 RSAPKPGACVAPNPPXQPRTXXRPYPGXYSXLXXPPP 924
PKP P P +P P P P P
Sbjct: 1093 -PVPKPSVAAPPVP--KPSVAVPPVPAPSGAPPVPKP 1126
Score = 25.8 bits (54), Expect = 8.7
Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Frame = +1
Query: 658 PPGKLPRAALP-VPDPARLPGIPG-----PPFSPLREXVXAFSPXLTLLGISVXGVKVRS 819
PP P A +P VP P+ P +P PP P +P L + V K
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238
Query: 820 APKPGA 837
P P +
Sbjct: 1239 VPAPSS 1244
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.9 bits (64), Expect = 0.53
Identities = 33/121 (27%), Positives = 43/121 (35%), Gaps = 18/121 (14%)
Frame = +1
Query: 616 AXTPTGTI------KIPXRFPPGKLPRAALPVPDPARLPG---IPGPPFSPLREXV-XAF 765
A TPT T IP PP ++P + P P P P + PP SP R +
Sbjct: 221 AGTPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSM 280
Query: 766 SPXLTLLG---ISVXGVKVRSAPKPGACVAPNPPXQPRTXXRPYP-----GXYSXLXXPP 921
+P + + +V +A P PP P R P S L PP
Sbjct: 281 NPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPP 340
Query: 922 P 924
P
Sbjct: 341 P 341
Score = 29.9 bits (64), Expect = 0.53
Identities = 32/105 (30%), Positives = 43/105 (40%)
Frame = +1
Query: 532 ALAGRFFP*GSAPPXQAXTKNRRSSXKVAXTPTGTIKIPXRFPPGKLPRAALPVPDPARL 711
A+ GR P + PP +R S+ V P+ P PP P +LP+ PA
Sbjct: 394 AIPGRSAP--ALPPL--GNASRTSTPPVPTPPSLPPSAPPSLPPSAPP--SLPMGAPAA- 446
Query: 712 PGIPGPPFSPLREXVXAFSPXLTLLGISVXGVKVRSAPKPGACVA 846
P P PP +P+ + A P L + AP P A VA
Sbjct: 447 P--PLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVA 489
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +1
Query: 793 SVXGVKVRSAPKPGACVAPNPPXQPRTXXRPYPGXYSXLXXPPP 924
S GV + P + V+P P QP + P S PPP
Sbjct: 149 SASGVNAPTVSAPNSMVSPPPSFQPPSAAAPATSLPSDYNPPPP 192
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 3.8
Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Frame = +1
Query: 553 P*GSAPPXQAXTKNRRSSXKVAXTPTGTIKIPXRFPPGKLPRAALPVPDPARLPGIPG-- 726
P SAPP + +S P+ IP PP P A PV P P +P
Sbjct: 139 PPTSAPPRPSIPPPSPAS--APPIPSKAPPIPSSLPPPAQP--AAPVKSPPSAPSLPSAV 194
Query: 727 PPFSP 741
PP P
Sbjct: 195 PPMPP 199
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = +1
Query: 604 SXKVAXTPTGTIKIPXRFPPGKLPRAAL-PVPDPARLPGIPGPPFSP 741
S + A P + +P PP P +AL P PA I G P P
Sbjct: 1877 SNQAAPPPPPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMP 1923
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 26.2 bits (55), Expect = 6.6
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = +1
Query: 664 GKLPRAALPVPDPARLPGIPGPPFSPLREXVXAFSPXLTLLGISVXG 804
GK P AA RLP +P PP S +R P L + G
Sbjct: 630 GKNPLAAENHASGGRLPKVPIPPLSNMRRGSVPIIPSSASLPMRTSG 676
>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 156 CFICEICDAIALFVTIISCIKQVNXKQL 239
CF+ EI DA + I+ C++Q K L
Sbjct: 219 CFLKEIWDAQKIRARILHCLEQAQFKDL 246
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +1
Query: 658 PPGKLPRAALPVPDPARLPGIPGPPFSP 741
PP P ALP PA PG P P P
Sbjct: 522 PPMVPPGMALPPGMPAPFPGYPAVPAMP 549
>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 349 EEPPKYATRLSPARLPDSLMQKK 281
+ PP +ATRL+ P+SL+Q +
Sbjct: 303 QPPPSFATRLAKQSDPNSLLQSE 325
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = +1
Query: 577 QAXTKNRRSSXKVAXTPTGTIKIPXRFPPGKLPRAALPVPDPARLPG--IPGPP 732
Q+ R+++ K+ P +I+IP P K P A P G +P P
Sbjct: 333 QSAPVQRKTTPKIQRLPPSSIQIPPPKPMQKFPANAASSESPPNATGNFLPSGP 386
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 679 AALPVPDPARLPGIPGPPFSP 741
A +PVP PA + G P PP P
Sbjct: 747 APIPVPPPAPIMGGPPPPPPP 767
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,438,709
Number of Sequences: 5004
Number of extensions: 65123
Number of successful extensions: 182
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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