Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_O21
(926 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical pr... 32 0.67
Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical pr... 32 0.67
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 31 1.2
Z68760-2|CAA92995.1| 597|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.0
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.0
AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical ... 30 2.0
AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin fami... 30 2.0
AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical ... 30 2.7
AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical ... 30 2.7
AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical ... 30 2.7
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 3.6
U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein. 29 3.6
AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp (sp... 29 3.6
AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical... 29 4.7
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 29 6.2
Z69662-1|CAA93499.1| 359|Caenorhabditis elegans Hypothetical pr... 28 8.2
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 8.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 8.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 8.2
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 28 8.2
Z77662-5|CAB01192.2| 579|Caenorhabditis elegans Hypothetical pr... 25 9.0
>Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical protein
F40F11.2b protein.
Length = 1607
Score = 31.9 bits (69), Expect = 0.67
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +1
Query: 505 KGQETVKKAALAGRFFP*GSAPPXQAXTKNRRSSXKVAXTPTGTIKIPXRFPPGKLPRAA 684
KGQ KAA RF P + P + T S V+ TP+ + + + P GK P
Sbjct: 1375 KGQLAKNKAAFCNRFNPFANVPSSKPST-----SSAVSATPSTSSAVSAKLPTGKTPGRP 1429
Query: 685 LPVPDP 702
+ + P
Sbjct: 1430 VALSTP 1435
>Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical protein
F40F11.2a protein.
Length = 1593
Score = 31.9 bits (69), Expect = 0.67
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +1
Query: 505 KGQETVKKAALAGRFFP*GSAPPXQAXTKNRRSSXKVAXTPTGTIKIPXRFPPGKLPRAA 684
KGQ KAA RF P + P + T S V+ TP+ + + + P GK P
Sbjct: 1361 KGQLAKNKAAFCNRFNPFANVPSSKPST-----SSAVSATPSTSSAVSAKLPTGKTPGRP 1415
Query: 685 LPVPDP 702
+ + P
Sbjct: 1416 VALSTP 1421
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 31.1 bits (67), Expect = 1.2
Identities = 30/92 (32%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
Frame = +1
Query: 658 PPGKLPRAALPVPDPARLPGIPGPPFSPLREXVXAFSPXLTLLGISVXGVKV-RSAPKPG 834
PP P+ A+P P P P P P + V A +P L + V AP P
Sbjct: 53 PPAPYPQQAVPAPAP---PPAPYP-----QHAVPAPAPPLASYPQNAVPVPAPPPAPYPQ 104
Query: 835 ACV-APNPPXQPRTXXR-PYPGXYSXLXXPPP 924
V AP PP P P P Y PPP
Sbjct: 105 HAVPAPAPPPAPYPQHAVPAPAPYQQQPPPPP 136
>Z68760-2|CAA92995.1| 597|Caenorhabditis elegans Hypothetical
protein F36H1.3 protein.
Length = 597
Score = 30.3 bits (65), Expect = 2.0
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +1
Query: 589 KNRRSSXKVAXTPTGTIKIPXRFP-PGKLPRAALPVPDPARLPGIPGPPFSPLREXVXAF 765
K+ + + P T P P P KLP A P P P P P SPL V +
Sbjct: 486 KDEDDGAQPSSAPVHTPPAPPAIPSPAKLPTA----PPPVEKPVTPSPSASPLPSPVSSP 541
Query: 766 SPXL 777
+P L
Sbjct: 542 APQL 545
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 2.0
Identities = 30/104 (28%), Positives = 33/104 (31%), Gaps = 3/104 (2%)
Frame = +1
Query: 622 TPTGTIKIPXRFPPGKLPRAALPVPDPARLPGIPGPPFSPLREXVXAFSPXLTLLGISVX 801
TP T + P PP P P P R PG PG P P F P +
Sbjct: 280 TPGMTPRPPP--PPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPP------GMG 331
Query: 802 GVKVRSAP---KPGACVAPNPPXQPRTXXRPYPGXYSXLXXPPP 924
G+ P PG P PP P YP PP
Sbjct: 332 GMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPP 375
Score = 28.7 bits (61), Expect = 6.2
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Frame = +1
Query: 685 LPVPDPARLPGIPGPPFSPLREXVXAFSPXLTLLGISVXGVKVR--SAPKPGACVAPNPP 858
+P P +PG+ + + P L+G++ G + + P P V P PP
Sbjct: 218 VPANTPLAMPGVHAA-IAAHATGRPGYQPP-PLMGMAQSGYQGQYPPVPPPPPSVTPMPP 275
Query: 859 XQPRT---XXRPYPGXYSXLXXPPP 924
P T RP P S + PPP
Sbjct: 276 PMPPTPGMTPRPPPPPSSGMWPPPP 300
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 2.0
Identities = 30/104 (28%), Positives = 33/104 (31%), Gaps = 3/104 (2%)
Frame = +1
Query: 622 TPTGTIKIPXRFPPGKLPRAALPVPDPARLPGIPGPPFSPLREXVXAFSPXLTLLGISVX 801
TP T + P PP P P P R PG PG P P F P +
Sbjct: 290 TPGMTPRPPP--PPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPP------GMG 341
Query: 802 GVKVRSAP---KPGACVAPNPPXQPRTXXRPYPGXYSXLXXPPP 924
G+ P PG P PP P YP PP
Sbjct: 342 GMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPP 385
Score = 28.7 bits (61), Expect = 6.2
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Frame = +1
Query: 685 LPVPDPARLPGIPGPPFSPLREXVXAFSPXLTLLGISVXGVKVR--SAPKPGACVAPNPP 858
+P P +PG+ + + P L+G++ G + + P P V P PP
Sbjct: 228 VPANTPLAMPGVHAA-IAAHATGRPGYQPP-PLMGMAQSGYQGQYPPVPPPPPSVTPMPP 285
Query: 859 XQPRT---XXRPYPGXYSXLXXPPP 924
P T RP P S + PPP
Sbjct: 286 PMPPTPGMTPRPPPPPSSGMWPPPP 310
>AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical
protein Y40B1A.5 protein.
Length = 134
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 568 PPXQAXTKNRRSSXKVAXTPTGTIKIPXRFPPGKLPRAALPVPDPARLPGIPGPP 732
PP A R +++ + R PP LP + +P P P +P + GPP
Sbjct: 25 PPPPAPPALPRELTQISTETAAAVAALVRKPPPSLPPSTMP-PGPHGMPFMGGPP 78
>AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin family
protein 10 protein.
Length = 2302
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +1
Query: 643 IPXRFPPGKLPRAALPVPDPARLPGIPGPPFSPLREXVXAFSPXLTLLGISV 798
+P + P + R+A+P P ++ +P P + V A SP +LG+++
Sbjct: 1502 VPLKEPARQTTRSAVPSPTVPKIITVPEPAHQTDSQRVTAPSPVPRILGVTI 1553
>AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical
protein H28G03.2c protein.
Length = 275
Score = 29.9 bits (64), Expect = 2.7
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Frame = +1
Query: 658 PPGKLPRAALPVPDPARLP--GIPGPPFSPLREXVXAFSPXLTLLGISVXGVKVRSAPKP 831
PPG P +P P P G+P PP L A P ++LLG V P
Sbjct: 84 PPGMGPPPFMPPPIGMPPPPLGMP-PPHIGLGAAPYAVPPPMSLLGPPPFSVPPSVPPPT 142
Query: 832 GACVAP-NPPXQPRTXXRPYPGXYS 903
+ AP PP ++ +P P S
Sbjct: 143 SSAAAPIVPPPPVQSTAQPPPSGTS 167
>AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical
protein H28G03.2b protein.
Length = 298
Score = 29.9 bits (64), Expect = 2.7
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Frame = +1
Query: 658 PPGKLPRAALPVPDPARLP--GIPGPPFSPLREXVXAFSPXLTLLGISVXGVKVRSAPKP 831
PPG P +P P P G+P PP L A P ++LLG V P
Sbjct: 107 PPGMGPPPFMPPPIGMPPPPLGMP-PPHIGLGAAPYAVPPPMSLLGPPPFSVPPSVPPPT 165
Query: 832 GACVAP-NPPXQPRTXXRPYPGXYS 903
+ AP PP ++ +P P S
Sbjct: 166 SSAAAPIVPPPPVQSTAQPPPSGTS 190
>AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical
protein H28G03.2a protein.
Length = 548
Score = 29.9 bits (64), Expect = 2.7
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Frame = +1
Query: 658 PPGKLPRAALPVPDPARLP--GIPGPPFSPLREXVXAFSPXLTLLGISVXGVKVRSAPKP 831
PPG P +P P P G+P PP L A P ++LLG V P
Sbjct: 357 PPGMGPPPFMPPPIGMPPPPLGMP-PPHIGLGAAPYAVPPPMSLLGPPPFSVPPSVPPPT 415
Query: 832 GACVAP-NPPXQPRTXXRPYPGXYS 903
+ AP PP ++ +P P S
Sbjct: 416 SSAAAPIVPPPPVQSTAQPPPSGTS 440
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.5 bits (63), Expect = 3.6
Identities = 24/81 (29%), Positives = 31/81 (38%)
Frame = +1
Query: 643 IPXRFPPGKLPRAALPVPDPARLPGIPGPPFSPLREXVXAFSPXLTLLGISVXGVKVRSA 822
+P F P +P P P GIP PP P+ + P + G
Sbjct: 69 VPNGFIPPPPGPGGIPPPPPMFAGGIPPPP--PMMGGIPPPPP--------MFGAPPPPP 118
Query: 823 PKPGACVAPNPPXQPRTXXRP 885
P G VAP PP +P+T P
Sbjct: 119 PPSGLGVAPQPP-RPKTPVNP 138
>U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein.
Length = 655
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 661 PGKLPRAALPVPDPARLPGIPGPPFSPLRE 750
PG++P PVP P +PG+P P+R+
Sbjct: 510 PGQMPSGWPPVP-PMGMPGMPNQALPPIRQ 538
>AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp
(splicing factor) relatedprotein 21 protein.
Length = 655
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 661 PGKLPRAALPVPDPARLPGIPGPPFSPLRE 750
PG++P PVP P +PG+P P+R+
Sbjct: 510 PGQMPSGWPPVP-PMGMPGMPNQALPPIRQ 538
>AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical
protein Y37A1B.11 protein.
Length = 691
Score = 29.1 bits (62), Expect = 4.7
Identities = 23/91 (25%), Positives = 31/91 (34%), Gaps = 2/91 (2%)
Frame = +1
Query: 658 PPGKLPRAALPVPDPARLPGIPGPPFSPLREXVXAFSPXLTLLGISVXGVKVRSAPKPGA 837
PP P LP P P +P P + + + SP + + +P+P
Sbjct: 487 PPSPQPVYRLPSPKPVTPEPLPSPTITDVSLAIATPSPEES----DDDQELILPSPEPSP 542
Query: 838 CVAPNPPXQPR--TXXRPYPGXYSXLXXPPP 924
P PP PR T P P PP
Sbjct: 543 VREPTPPPPPREPTPREPTPEPEPVREPTPP 573
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 28.7 bits (61), Expect = 6.2
Identities = 30/120 (25%), Positives = 38/120 (31%), Gaps = 1/120 (0%)
Frame = +1
Query: 568 PPXQAXTKNRRSSXKVAXTPTGTIKI-PXRFPPGKLPRAALPVPDPARLPGIPGPPFSPL 744
PP Q + +A P +I P PG P PA PG PGP +
Sbjct: 96 PPGQPGAPGEQGHPGLAGQPGSGARINPATGRPGFCITCPAGAPGPAGPPGAPGPKGNNG 155
Query: 745 REXVXAFSPXLTLLGISVXGVKVRSAPKPGACVAPNPPXQPRTXXRPYPGXYSXLXXPPP 924
+ A S G S +PG +P P + R PG P P
Sbjct: 156 QPGAPAQSGGRGPPGPRGPAGDAGSPGQPGHPGSPGNPGRGGQRSRGLPGPSGRPGPPGP 215
>Z69662-1|CAA93499.1| 359|Caenorhabditis elegans Hypothetical
protein F56D5.1 protein.
Length = 359
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -1
Query: 866 G*XGGXGATQAPGL-GAERTLTPXTEIPNSVXYGEKAXTXSRRGEKGGPG 720
G G G +PGL G + L P E+P S+ +GE+G PG
Sbjct: 109 GQPGTPGKPGSPGLEGVDVDLEPQEELPCSICPAGPQGPRGAQGERGLPG 158
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.3 bits (60), Expect = 8.2
Identities = 31/91 (34%), Positives = 32/91 (35%), Gaps = 2/91 (2%)
Frame = +1
Query: 658 PPGKLPRAA--LPVPDPARLPGIPGPPFSPLREXVXAFSPXLTLLGISVXGVKVRSAPKP 831
PPG P P P P LP I G P P P L IS G P P
Sbjct: 716 PPGLPPITGGPPPPPPPGGLPPITGGPPPP--------PPPGGLPPIS--GGPPPPPPPP 765
Query: 832 GACVAPNPPXQPRTXXRPYPGXYSXLXXPPP 924
G C P PP P PG + PPP
Sbjct: 766 GGCPPPPPP--------PPPGGFKGGPPPPP 788
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.3 bits (60), Expect = 8.2
Identities = 31/91 (34%), Positives = 32/91 (35%), Gaps = 2/91 (2%)
Frame = +1
Query: 658 PPGKLPRAA--LPVPDPARLPGIPGPPFSPLREXVXAFSPXLTLLGISVXGVKVRSAPKP 831
PPG P P P P LP I G P P P L IS G P P
Sbjct: 716 PPGLPPITGGPPPPPPPGGLPPITGGPPPP--------PPPGGLPPIS--GGPPPPPPPP 765
Query: 832 GACVAPNPPXQPRTXXRPYPGXYSXLXXPPP 924
G C P PP P PG + PPP
Sbjct: 766 GGCPPPPPP--------PPPGGFKGGPPPPP 788
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.3 bits (60), Expect = 8.2
Identities = 31/91 (34%), Positives = 32/91 (35%), Gaps = 2/91 (2%)
Frame = +1
Query: 658 PPGKLPRAA--LPVPDPARLPGIPGPPFSPLREXVXAFSPXLTLLGISVXGVKVRSAPKP 831
PPG P P P P LP I G P P P L IS G P P
Sbjct: 299 PPGLPPITGGPPPPPPPGGLPPITGGPPPP--------PPPGGLPPIS--GGPPPPPPPP 348
Query: 832 GACVAPNPPXQPRTXXRPYPGXYSXLXXPPP 924
G C P PP P PG + PPP
Sbjct: 349 GGCPPPPPP--------PPPGGFKGGPPPPP 371
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +1
Query: 646 PXRFPPGKLPRAALPVPDPARLPGIPGPPFSP 741
P PPG P L P P +PG P P P
Sbjct: 691 PAGLPPGVPPMFNLNAPPPPGIPGYPPAPPPP 722
>Z77662-5|CAB01192.2| 579|Caenorhabditis elegans Hypothetical
protein F47B8.5 protein.
Length = 579
Score = 25.4 bits (53), Expect(2) = 9.0
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 658 PPGKLPRAALPVPDPARLPGIPGPPFSP 741
PP P A P P PA P +P P +P
Sbjct: 407 PPSSPPADAAPAPPPAPEP-VPAPAPAP 433
Score = 21.0 bits (42), Expect(2) = 9.0
Identities = 10/35 (28%), Positives = 11/35 (31%)
Frame = +1
Query: 787 GISVXGVKVRSAPKPGACVAPNPPXQPRTXXRPYP 891
G + AP P AP P P P P
Sbjct: 473 GEAAPAAPAEPAPAPAPAPAPAPEAAPAPEPAPAP 507
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,797,432
Number of Sequences: 27780
Number of extensions: 424635
Number of successful extensions: 1599
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -