Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_O20
         (850 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73230-1|AAB30812.1|   35|Tribolium castaneum twist protein.           25   0.57 
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    25   0.57 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   2.3  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    22   5.3  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   7.0  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    22   7.0  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   9.3  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   9.3  

>S73230-1|AAB30812.1|   35|Tribolium castaneum twist protein.
          Length = 35

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +3

Query: 531 QQKTENLKTCFLNLKQSFPTVESANNLSLVE 623
           +Q+T++L   F +L++S PT+ S + LS ++
Sbjct: 6   RQRTQSLNEAFASLRKSIPTMPS-DKLSKIQ 35


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +3

Query: 531 QQKTENLKTCFLNLKQSFPTVESANNLSLVE 623
           +Q+T++L   F +L++S PT+ S + LS ++
Sbjct: 106 RQRTQSLNEAFASLRKSIPTMPS-DKLSKIQ 135


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 648 HXINFLRIFQQGSSYWRIP 592
           H I ++      SSYW+IP
Sbjct: 386 HEIRYMSTIDLRSSYWQIP 404


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 14/50 (28%), Positives = 18/50 (36%)
 Frame = +2

Query: 650 PSWYREIPPKSVPHRHPQTWXXH*SSSCAKTPPXHTALAQXQTDCPRRDF 799
           P+W+ E+  K  PH   +    H S    K  P      Q     P  DF
Sbjct: 93  PNWWHELETKFNPHHEIKLQHLHQS----KFNPHEEVKLQHLHQFPHHDF 138


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = +2

Query: 740 TPPXHTALAQXQTDCPRRDFXPVNTXCPSP 829
           TPP    L   +++   +D     T C SP
Sbjct: 107 TPPNSEPLVSPKSEKEEKDMETTLTPCASP 136


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 11  YHLTIGNS*DLSACPTFRSRTSFLVTMMWKTVLITI 118
           YHL I  S   + CP F    +   T++ + +L TI
Sbjct: 252 YHLAILWSCTSTNCPRFLIMLALSYTVIQEVMLFTI 287


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 667 NPSQECSTPT 696
           N +Q+CSTPT
Sbjct: 429 NENQDCSTPT 438


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 442 TVPINSSTLCATRTETG 492
           T+ INS T+C T +  G
Sbjct: 146 TMEINSDTMCVTFSNLG 162


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,261
Number of Sequences: 336
Number of extensions: 3771
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23451794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)