Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_O20
         (850 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1039 + 33707196-33708815                                         31   1.5  
08_01_0409 + 3625071-3625228,3625829-3625905,3626310-3626889,362...    28   8.2  
06_03_1512 - 30688098-30688133,30688401-30688537,30688744-306888...    28   8.2  
03_06_0476 + 34199577-34199638,34200267-34200397,34200535-342006...    28   8.2  

>02_05_1039 + 33707196-33708815
          Length = 539

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 16  PHYREFLRFECVSNLSKSNKFPCYNDVEDCLDNDFRCRCVG 138
           PH R  LRFE    L+ + +F   +  E C    F CR  G
Sbjct: 285 PHLRNLLRFEAPCVLTNTLEFVDKDGKEQCFSAHFLCRPAG 325


>08_01_0409 +
           3625071-3625228,3625829-3625905,3626310-3626889,
           3626974-3627111,3627318-3627387,3627449-3627933,
           3628681-3628890,3629259-3629326,3629855-3629961,
           3630275-3630346,3630448-3630614,3630709-3630820,
           3631464-3631650,3632174-3632286
          Length = 847

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 19/70 (27%), Positives = 29/70 (41%)
 Frame = -2

Query: 237 KVRNXXXXXXXXXXALFLVHCEVTTAVI*LKSSANTPAAKIVIKTVFHIIVTRKLVRLRK 58
           KVRN           LFL  C + T  I   ++A  P   I++  +   +VT  L+ L  
Sbjct: 341 KVRNLILTGCLFCGPLFLTFCFLNTVAIAYSATAALPFGTIIVIILIWALVTSPLLVLGG 400

Query: 57  VGHALKS*EF 28
           +     + EF
Sbjct: 401 IAGKNSNTEF 410


>06_03_1512 -
           30688098-30688133,30688401-30688537,30688744-30688834,
           30689265-30690815
          Length = 604

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = +3

Query: 297 PSQTVHSTRFSXKYCDKSAQLKGCISSVLQGVRPCVGNDYANHINDA 437
           PS T HS R +    D  AQL+   SS      P +  D AN + DA
Sbjct: 108 PSPT-HSRRLAALLADLDAQLRALSSSSSSTADPSLLLDVANQLRDA 153


>03_06_0476 +
           34199577-34199638,34200267-34200397,34200535-34200698,
           34201007-34201117,34201308-34201387,34201489-34201639,
           34201736-34201829,34202421-34202509,34203672-34203745,
           34203859-34204021,34204445-34204530,34205011-34205094,
           34205186-34205366,34205837-34205887
          Length = 506

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
 Frame = +2

Query: 146 FSQITAVVTSQCTKNNA---EDXVPE---VEAALRTFGNCLKGLVDLNVLKTEIEEAKPN 307
           FSQ T V+ +Q  + +    +D   +   V  A R++G  L GLV ++V +  + E+KP+
Sbjct: 109 FSQFTVVIATQLPERSLLKLDDICRKANIVLVAARSYG--LTGLVRISVKEHNVIESKPD 166

Query: 308 GALDEV 325
             LD++
Sbjct: 167 HFLDDL 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,005,806
Number of Sequences: 37544
Number of extensions: 446177
Number of successful extensions: 982
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)