Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_O20
         (850 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024801-4|AAF59648.4|  485|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical pr...    28   7.3  
L23647-8|AAK29993.1|   54|Caenorhabditis elegans Hypothetical pr...    28   7.3  
L07144-2|AAK21439.1|   54|Caenorhabditis elegans Hypothetical pr...    28   7.3  
DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.      28   7.3  
EF584655-1|ABQ57413.1| 1187|Caenorhabditis elegans LAD-2 long is...    28   9.6  
AF456361-1|AAL60232.1| 1187|Caenorhabditis elegans immunoglobuli...    28   9.6  
AF039715-5|AAB96730.1|  391|Caenorhabditis elegans Hypothetical ...    28   9.6  
AC084153-7|AAK84593.1|  451|Caenorhabditis elegans Hypothetical ...    28   9.6  
AC024817-50|AAP68915.1|  143|Caenorhabditis elegans L1 cam adhes...    28   9.6  
AC024817-49|AAF59572.3| 1187|Caenorhabditis elegans L1 cam adhes...    28   9.6  

>AC024801-4|AAF59648.4|  485|Caenorhabditis elegans Hypothetical
           protein Y50D7A.3a protein.
          Length = 485

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 684 TLLGGISRYQEGHXINFLRIFQQGSSYWRIPQWGSSVSNLKSM 556
           TLL G + +     +  LR+ QQG   +R  QW +  +  K++
Sbjct: 232 TLLAGCAPFYHRKQLMMLRLIQQGKFEFRNEQWANITAEAKNL 274


>Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical
           protein ZK520.3a protein.
          Length = 1383

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 411 DYANHINDAQNSTNQLIDFVCYKDGDRIALFIXEGG 518
           D   ++ DA N T +LID    K+GD +A+ +   G
Sbjct: 62  DKKGNVIDALNPTGKLIDIAWDKEGDVLAIAVANTG 97


>Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical
           protein ZK520.3a protein.
          Length = 1383

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 411 DYANHINDAQNSTNQLIDFVCYKDGDRIALFIXEGG 518
           D   ++ DA N T +LID    K+GD +A+ +   G
Sbjct: 62  DKKGNVIDALNPTGKLIDIAWDKEGDVLAIAVANTG 97


>L23647-8|AAK29993.1|   54|Caenorhabditis elegans Hypothetical
           protein ZC262.5 protein.
          Length = 54

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +2

Query: 122 AAGVLADDFSQITAVVTSQCTKNNAEDXVPEVEAALRT 235
           AAG+    +SQI A V  QCTK  A   V + +A L+T
Sbjct: 6   AAGLNYVRYSQIAAQVVRQCTKGGAN--VKKPQATLKT 41


>L07144-2|AAK21439.1|   54|Caenorhabditis elegans Hypothetical
           protein R05D3.6 protein.
          Length = 54

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +2

Query: 122 AAGVLADDFSQITAVVTSQCTKNNAEDXVPEVEAALRT 235
           AAG+    +SQI A V  QCTK  A   V + +A L+T
Sbjct: 6   AAGLNYVRYSQIAAQVVRQCTKGGAN--VKKPQATLKT 41


>DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.
          Length = 1383

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 411 DYANHINDAQNSTNQLIDFVCYKDGDRIALFIXEGG 518
           D   ++ DA N T +LID    K+GD +A+ +   G
Sbjct: 62  DKKGNVIDALNPTGKLIDIAWDKEGDVLAIAVANTG 97


>EF584655-1|ABQ57413.1| 1187|Caenorhabditis elegans LAD-2 long isoform
            protein.
          Length = 1187

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -1

Query: 76   TCSTSKGWTRTQILRIPYSEVVXR 5
            T  +SK W +++I+ +PY+E+  R
Sbjct: 1055 TAESSKTWFQSEIIYLPYTEITIR 1078


>AF456361-1|AAL60232.1| 1187|Caenorhabditis elegans immunoglobulin
            domain-containingprotein Y54G2A.25 protein.
          Length = 1187

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -1

Query: 76   TCSTSKGWTRTQILRIPYSEVVXR 5
            T  +SK W +++I+ +PY+E+  R
Sbjct: 1055 TAESSKTWFQSEIIYLPYTEITIR 1078


>AF039715-5|AAB96730.1|  391|Caenorhabditis elegans Hypothetical
           protein R06A10.4 protein.
          Length = 391

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 112 YQDSLPHHCNKETCSTSKGWTRTQILRIPYSEVV 11
           YQ + P+    ETC T +      +LR+PY++ V
Sbjct: 213 YQATKPNETMTETCGTPEYIAPELLLRVPYTQKV 246


>AC084153-7|AAK84593.1|  451|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.4 protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 209 PEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPN 307
           PE E  +RT G+   G++D+N  +   + A+PN
Sbjct: 64  PEFEVEIRTNGHIYAGILDINGAEPGDKGAEPN 96


>AC024817-50|AAP68915.1|  143|Caenorhabditis elegans L1 cam
          adhesion molecule homologprotein 2, isoform c protein.
          Length = 143

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -1

Query: 76 TCSTSKGWTRTQILRIPYSEVVXR 5
          T  +SK W +++I+ +PY+E+  R
Sbjct: 11 TAESSKTWFQSEIIYLPYTEITIR 34


>AC024817-49|AAF59572.3| 1187|Caenorhabditis elegans L1 cam adhesion
            molecule homologprotein 2, isoform a protein.
          Length = 1187

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -1

Query: 76   TCSTSKGWTRTQILRIPYSEVVXR 5
            T  +SK W +++I+ +PY+E+  R
Sbjct: 1055 TAESSKTWFQSEIIYLPYTEITIR 1078


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,263,105
Number of Sequences: 27780
Number of extensions: 370310
Number of successful extensions: 897
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)