Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_O20
         (850 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25200.1 68418.m02987 hypothetical protein similar to zinc fi...    31   0.73 
At5g18636.1 68418.m02212 hypothetical protein                          31   0.73 
At5g38280.1 68418.m04615 serine/threonine protein kinase (PR5K) ...    30   2.2  
At3g54060.1 68416.m05977 hypothetical protein mucin MUC3, Homo s...    30   2.2  
At3g52800.1 68416.m05818 zinc finger (AN1-like) family protein c...    29   3.0  
At2g16410.1 68415.m01879 hypothetical protein similar to zinc fi...    29   3.0  
At2g15550.1 68415.m01781 hypothetical protein similar to zinc fi...    29   5.2  
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel...    28   6.8  

>At5g25200.1 68418.m02987 hypothetical protein similar to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 367

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +3

Query: 576 QSFPTVESANNLSLVEKCAKS**XDPPGIVKSLPRVFHTDTRKHGXXTDXVHAQ 737
           +++  VE++NNLSL+ +       +   +V +LPR +   T+ HG   D  + Q
Sbjct: 26  EAYVMVEASNNLSLIARPLNPRVQNLNSVVVALPRSWGLTTQVHGRVLDATYVQ 79


>At5g18636.1 68418.m02212 hypothetical protein
          Length = 367

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +3

Query: 576 QSFPTVESANNLSLVEKCAKS**XDPPGIVKSLPRVFHTDTRKHGXXTDXVHAQ 737
           +++  VE++NNLSL+ +       +   +V +LPR +   T+ HG   D  + Q
Sbjct: 26  EAYVMVEASNNLSLIARPLNPRVQNLNSVVVALPRSWGLTTQVHGRVLDATYVQ 79


>At5g38280.1 68418.m04615 serine/threonine protein kinase (PR5K)
           identical to receptor serine/threonine kinase PR5K
           gi|1235680|gb|AAC49208
          Length = 665

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
 Frame = +2

Query: 128 GVLADDFSQITAVVTSQCTKNNAEDXVPEVEAALRTFGNCLKGLVDLNVLKTE---IEEA 298
           G LAD    + AV   + ++ N E+ + EV +  RT    +  L+     K +   I E 
Sbjct: 348 GKLADSGRDV-AVKILKVSEGNGEEFINEVASMSRTSHVNIVSLLGFCYEKNKRAIIYEF 406

Query: 299 KPNGALDEVFXEVL*QECSTERLYQL 376
            PNG+LD+     +  +   ERLY +
Sbjct: 407 MPNGSLDKYISANMSTKMEWERLYDV 432


>At3g54060.1 68416.m05977 hypothetical protein mucin MUC3, Homo
           sapiens, EMBL:AF007193
          Length = 456

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 722 SSSCAKTPPXHTALAQXQTDCPRRDFXPVNTXC 820
           SS+C +TP  H +    +++  +++  P NT C
Sbjct: 250 SSTCFRTPQKHASSGSDKSNSSQKEVTPTNTNC 282


>At3g52800.1 68416.m05818 zinc finger (AN1-like) family protein
           contains Pfam domain, PF01428: AN1-like Zinc finger
          Length = 170

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 696 CRCGTLLGGISRYQEGHXINF 634
           CRCGT+  G+ RY E H  ++
Sbjct: 125 CRCGTMFCGVHRYPEIHGCSY 145


>At2g16410.1 68415.m01879 hypothetical protein similar to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 204

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 650 PSWYREIPPKSVPH 691
           PSWYR+ PPK +P+
Sbjct: 7   PSWYRDSPPKQLPY 20


>At2g15550.1 68415.m01781 hypothetical protein similar to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 589

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +2

Query: 650 PSWYREIPPKSVP 688
           PSWYRE PPK  P
Sbjct: 7   PSWYRESPPKQPP 19


>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
            contains Pfam PF02138: Beige/BEACH domain; contains Pfam
            PF00400: WD domain, G-beta repeat (3 copies)
          Length = 2946

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 134  LADDFSQITAVVTSQCTKNNAEDXVPEVEAALRTFGNCLKGLVD 265
            +AD   QI+AV   + T  +A +    V  A  ++G+C   L +
Sbjct: 1443 MADSSGQISAVAMERLTAASAAEPYESVSCAFVSYGSCAMDLAE 1486


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,251,475
Number of Sequences: 28952
Number of extensions: 347467
Number of successful extensions: 867
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)