Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_O18
         (1070 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    30   3.6  
11_06_0610 - 25449085-25453284                                         29   8.3  

>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 17/51 (33%), Positives = 17/51 (33%)
 Frame = +2

Query: 551 SXXAXPTPXPXPXXXQXXXPXAXSPXXPXXPXTXXXXPPXXXKSXPKPPXT 703
           S  A P P P P       P A  P  P         PP      PKPP T
Sbjct: 728 SAPAPPLPPPLPAAANKRNPPAPPPP-PLMTGKKAPAPPPPPPQAPKPPGT 777


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 16/61 (26%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
 Frame = +2

Query: 560 AXPTPXPXPXXXQXXXPXAXSPXX--PXXPXTXXXXPPXXXKSXPKPPXTXKXXRXTXXP 733
           A   P P P       P +  P    P  P T    PP   +  P PP +      +  P
Sbjct: 724 ASSPPPPAPEGHTPSPPKSSPPEEKSPPIPPTSHTSPPTPEEYTPSPPKSSPPEEKSPPP 783

Query: 734 H 736
           H
Sbjct: 784 H 784


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,907,609
Number of Sequences: 37544
Number of extensions: 64191
Number of successful extensions: 356
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3187874508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)