Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_O18
         (1070 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)                  30   2.8  

>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
          Length = 457

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 14/44 (31%), Positives = 14/44 (31%)
 Frame = +2

Query: 566 PTPXPXPXXXQXXXPXAXSPXXPXXPXTXXXXPPXXXKSXPKPP 697
           P P P P       P   SP  P  P      PP      P PP
Sbjct: 370 PPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPP 413



 Score = 29.5 bits (63), Expect = 4.9
 Identities = 15/56 (26%), Positives = 15/56 (26%)
 Frame = +2

Query: 566 PTPXPXPXXXQXXXPXAXSPXXPXXPXTXXXXPPXXXKSXPKPPXTXKXXRXTXXP 733
           P P P P       P    P  P  P      PP      P PP      R    P
Sbjct: 385 PPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPPPALRLACAP 440



 Score = 29.1 bits (62), Expect = 6.4
 Identities = 13/44 (29%), Positives = 14/44 (31%)
 Frame = +2

Query: 566 PTPXPXPXXXQXXXPXAXSPXXPXXPXTXXXXPPXXXKSXPKPP 697
           P P P P       P    P  P  P      PP    + P PP
Sbjct: 381 PPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPP 424



 Score = 28.7 bits (61), Expect = 8.5
 Identities = 13/44 (29%), Positives = 13/44 (29%)
 Frame = +2

Query: 566 PTPXPXPXXXQXXXPXAXSPXXPXXPXTXXXXPPXXXKSXPKPP 697
           P P P P       P    P  P  P      PP      P PP
Sbjct: 367 PPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPP 410



 Score = 28.7 bits (61), Expect = 8.5
 Identities = 13/44 (29%), Positives = 13/44 (29%)
 Frame = +2

Query: 566 PTPXPXPXXXQXXXPXAXSPXXPXXPXTXXXXPPXXXKSXPKPP 697
           P P P P       P    P  P  P      PP      P PP
Sbjct: 378 PPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPP 421


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,344,793
Number of Sequences: 59808
Number of extensions: 36986
Number of successful extensions: 255
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3237068289
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)