Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_O17
(1073 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 45 2e-05
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 36 0.007
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 36 0.010
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 35 0.017
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.091
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 31 0.21
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.21
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 29 0.84
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 29 1.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.0
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 2.6
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 24 2.6
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 4.5
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 4.5
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 6.0
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 7.9
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 44.8 bits (101), Expect = 2e-05
Identities = 26/82 (31%), Positives = 27/82 (32%)
Frame = +3
Query: 603 PPPPPPPXXXXXSXXXPPPXPXXGXXXGXXKKKKXXXXXXXXPKPPPPXSXXXPXPPPPP 782
PPPPPP P P P G P PPP + P PPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPP----------PPPPPGVAGAGPPPPPPP 781
Query: 783 PXXGGXGGXRXXXXPPPPPXXP 848
P GG R P P
Sbjct: 782 PPAVSAGGSRYYAPAPQAEPEP 803
Score = 34.3 bits (75), Expect = 0.030
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +3
Query: 600 PPPPPPPPXXXXXSXXXPPPXP 665
PPPPPPPP PPP P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782
Score = 33.1 bits (72), Expect = 0.069
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +3
Query: 597 PPPPPPPPPXXXXXSXXXPPPXP 665
PPPPPPPP PPP P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783
Score = 29.9 bits (64), Expect = 0.64
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 597 PPPPPPPPPXXXXXSXXXPPPXP 665
PPPPPPPPP P P
Sbjct: 775 PPPPPPPPPAVSAGGSRYYAPAP 797
Score = 29.5 bits (63), Expect = 0.84
Identities = 22/83 (26%), Positives = 22/83 (26%)
Frame = +1
Query: 604 PPPPPPXXXXXXXXXXPPPXPXXGXXXXXXKKKXXPXXXLXTPNHPXLXPXXXXXPPPPP 783
PPPPPP P P P P P P PPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPA-----------PIMGGPPPPPPPPGVAGAGPPPPPP 780
Query: 784 PXXGGXGGXXXXXPPXPPXXXXP 852
P G P P P
Sbjct: 781 PPPAVSAGGSRYYAPAPQAEPEP 803
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/31 (35%), Positives = 11/31 (35%)
Frame = +1
Query: 976 PXTPPXXXQXXXPXXXXXPXXXXPXPPPPPP 1068
P PP P P PPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +1
Query: 595 PPPPPPPPPXXXXXXXXXXPPPXPXXG 675
PPPPPPP PPP G
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAG 788
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +3
Query: 597 PPPPPPPPPXXXXXSXXXPPPXP 665
P P P PPP PPP P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPP 768
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 36.3 bits (80), Expect = 0.007
Identities = 31/97 (31%), Positives = 31/97 (31%), Gaps = 9/97 (9%)
Frame = +3
Query: 585 KXXXPPPPPP------PPP--XXXXXSXXXPPPXPXXGXXXGXXKKKKXXXXXXXXPKPP 740
K PPPPPP PP S PPP P G P PP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSI---PLPPQGRSAPPPP 364
Query: 741 PPXSXXXPXPPPPPPXXGGXGGXRXXXXPP-PPPXXP 848
PP S PPP R PP PPP P
Sbjct: 365 PPRSAPSTGRQPPP-----LSSSRAVSNPPAPPPAIP 396
Score = 35.1 bits (77), Expect = 0.017
Identities = 25/91 (27%), Positives = 25/91 (27%), Gaps = 7/91 (7%)
Frame = +3
Query: 597 PPPPPPPP-------PXXXXXSXXXPPPXPXXGXXXGXXKKKKXXXXXXXXPKPPPPXSX 755
PPPPPPP P PPP P G P PPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Query: 756 XXPXPPPPPPXXGGXGGXRXXXXPPPPPXXP 848
P PP G P PP P
Sbjct: 397 GRSAPALPP--LGNASRTSTPPVPTPPSLPP 425
Score = 30.3 bits (65), Expect = 0.48
Identities = 21/85 (24%), Positives = 22/85 (25%), Gaps = 4/85 (4%)
Frame = +3
Query: 597 PPPPPPPPPXXXXXSXXXPPPXPXXGXXXGXXKKKKXXXXXXXXPKPPPPXSXXXPXPPP 776
PP P P S P P P G P P PP
Sbjct: 233 PPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPL 292
Query: 777 PPP----XXGGXGGXRXXXXPPPPP 839
PPP + PPPPP
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPPP 317
Score = 29.5 bits (63), Expect = 0.84
Identities = 26/97 (26%), Positives = 27/97 (27%), Gaps = 13/97 (13%)
Frame = +3
Query: 597 PPPPPP---------PPPXXXXXSXXXPPPXPXX--GXXXGXXKKKKXXXXXXXXPKPPP 743
PPPPPP PPP + PP P G P P P
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTP 420
Query: 744 PXSXXXPXP--PPPPPXXGGXGGXRXXXXPPPPPXXP 848
P P PP P G PP P P
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAP 457
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 35.9 bits (79), Expect = 0.010
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +3
Query: 600 PPPPPPPPXXXXXSXXXPPPXP 665
PPPPPPPP S PPP P
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
Score = 33.9 bits (74), Expect = 0.039
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +3
Query: 729 PKPPPPXSXXXPXPPPPPPXXG 794
P PPPP P PPPPP G
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPPG 31
Score = 31.1 bits (67), Expect = 0.28
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 597 PPPPPPPPPXXXXXSXXXPPPXPXXG 674
P PPPPPP PPP P G
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 30.7 bits (66), Expect = 0.37
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +1
Query: 595 PPPPPPPPPXXXXXXXXXXPPPXPXXG 675
PP PPPPP PPP P G
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 29.9 bits (64), Expect = 0.64
Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
Frame = +3
Query: 729 PKPPPPXSXXXP--XPPPPPP 785
P PPPP P PPPPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPP 29
Score = 29.5 bits (63), Expect = 0.84
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +3
Query: 762 PXPPPPPPXXGGXGGXRXXXXPPPPP 839
P PPPPPP G PPPPP
Sbjct: 9 PPPPPPPP------GFEPPSQPPPPP 28
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 762 PXPPPPPPXXGGXGGXRXXXXPPPP 836
P PPPPP G PPPP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 35.1 bits (77), Expect = 0.017
Identities = 19/63 (30%), Positives = 22/63 (34%)
Frame = +3
Query: 597 PPPPPPPPPXXXXXSXXXPPPXPXXGXXXGXXKKKKXXXXXXXXPKPPPPXSXXXPXPPP 776
PPPPPPPPP + P + P P + P PPP
Sbjct: 189 PPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPE--------IPPTYTPKQADPLPAPPP 240
Query: 777 PPP 785
PPP
Sbjct: 241 PPP 243
Score = 26.2 bits (55), Expect = 7.9
Identities = 20/64 (31%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Frame = +3
Query: 597 PPPPPPPPPXXXXXSXXXPP-PXPXXGXXXGXXKKKKXXXXXXXXPKPPPPXSXXXPXPP 773
P PPPPPPP S P P + PPPP + P P
Sbjct: 236 PAPPPPPPPTLPPQSTNTSQLPMP----------SRNVNNLGSQVNIPPPPAT---PSQP 282
Query: 774 PPPP 785
P PP
Sbjct: 283 PRPP 286
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 32.7 bits (71), Expect = 0.091
Identities = 27/84 (32%), Positives = 27/84 (32%), Gaps = 1/84 (1%)
Frame = -2
Query: 847 GXXGGGGGXXXXRXPPXPPXXGGGGGGXGXXXE-XGGGGLGXXXXXXXXFFFXFXPXXXP 671
G GGG G PP GG GG G E GG G F
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGG 243
Query: 670 XXGXGGGXXXXXXXXXGGGGGGGG 599
G GGG G GGG GG
Sbjct: 244 PGGFGGGLGGFGGGPGGFGGGPGG 267
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -3
Query: 675 PXXXGGGGGGXXXXXXXXGGGGGGGGG 595
P GGG GG GGG GG GG
Sbjct: 237 PGGFGGGPGGFGGGLGGFGGGPGGFGG 263
Score = 28.3 bits (60), Expect = 2.0
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -3
Query: 675 PXXXGGGGGGXXXXXXXXGGGGGGGGG 595
P GGG GG GGG GG GG
Sbjct: 244 PGGFGGGLGGFGGGPGGFGGGPGGHGG 270
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Frame = -3
Query: 663 GGGGGGXXXXXXXXGGGGGG-GGGXXXF 583
GGG GG GGG GG GGG F
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGF 254
Score = 27.5 bits (58), Expect = 3.4
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +2
Query: 461 GPXXXGGGVFKXKKKXXXFSXXPGGXGGGP 550
GP GGG F PGG GGGP
Sbjct: 236 GPGGFGGGPGGFGGGLGGFGGGPGGFGGGP 265
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -3
Query: 663 GGGGGGXXXXXXXXGGGGGGGGG 595
GG GGG GG GGG GG
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGG 246
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 31.5 bits (68), Expect = 0.21
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +1
Query: 595 PPPPPPPPPXXXXXXXXXXPPPXPXXG 675
PPPPPPPPP P P G
Sbjct: 306 PPPPPPPPPSNDFWKDSNEPAPADNKG 332
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.5 bits (68), Expect = 0.21
Identities = 33/159 (20%), Positives = 33/159 (20%), Gaps = 3/159 (1%)
Frame = +3
Query: 603 PPPPPPPXXXXXSXXXPPPXPXXGXXXGXXKKKKXXXXXXXXPKPP---PPXSXXXPXPP 773
PPP P P S P P G K PKP PP PP
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPP 1122
Query: 774 PPPPXXGGXGGXRXXXXPPPPPXXPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 953
P P PP P
Sbjct: 1123 VPKPSVAAPP-VPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPV 1181
Query: 954 PXPPXXXPPXXXPXXXXPXPXXXXXXXXXXPXXPPPPXP 1070
P P PP P P P P PP P
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 29.5 bits (63), Expect = 0.84
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +3
Query: 597 PPPPPPPPP 623
PPPPPPPPP
Sbjct: 945 PPPPPPPPP 953
Score = 27.1 bits (57), Expect = 4.5
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +3
Query: 762 PXPPPPPPXXGGXGG 806
P PPPPPP GG
Sbjct: 946 PPPPPPPPLVSAAGG 960
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 29.1 bits (62), Expect = 1.1
Identities = 25/88 (28%), Positives = 25/88 (28%), Gaps = 9/88 (10%)
Frame = +3
Query: 600 PPPP---------PPPPXXXXXSXXXPPPXPXXGXXXGXXKKKKXXXXXXXXPKPPPPXS 752
PPPP PPPP PPP G PPPP
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHH--EPGEHMPPPPMHHEPGEHMPPPPMH 265
Query: 753 XXXPXPPPPPPXXGGXGGXRXXXXPPPP 836
PPPP G PPPP
Sbjct: 266 HEPGEHMPPPPMHHEPG----EHMPPPP 289
Score = 29.1 bits (62), Expect = 1.1
Identities = 25/88 (28%), Positives = 25/88 (28%), Gaps = 9/88 (10%)
Frame = +3
Query: 600 PPPP---------PPPPXXXXXSXXXPPPXPXXGXXXGXXKKKKXXXXXXXXPKPPPPXS 752
PPPP PPPP PPP G PPPP
Sbjct: 234 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHH--EPGEHMPPPPMHHEPGEHMPPPPMH 291
Query: 753 XXXPXPPPPPPXXGGXGGXRXXXXPPPP 836
PPPP G PPPP
Sbjct: 292 HEPGEHMPPPPMHHEPG----EHMPPPP 315
Score = 29.1 bits (62), Expect = 1.1
Identities = 25/88 (28%), Positives = 25/88 (28%), Gaps = 9/88 (10%)
Frame = +3
Query: 600 PPPP---------PPPPXXXXXSXXXPPPXPXXGXXXGXXKKKKXXXXXXXXPKPPPPXS 752
PPPP PPPP PPP G PPPP
Sbjct: 260 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHH--EPGEHMPPPPMHHEPGEHMPPPPMH 317
Query: 753 XXXPXPPPPPPXXGGXGGXRXXXXPPPP 836
PPPP G PPPP
Sbjct: 318 HEPGEHMPPPPMHHEPG----EHMPPPP 341
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +3
Query: 729 PKPPPPXSXXXPXPPPPPPXXGGXGGXRXXXXPPPP 836
P PPPP P PP PP G PPPP
Sbjct: 1705 PTPPPP-PMSVPPPPSAPPMPAG-----PPSAPPPP 1734
Score = 27.5 bits (58), Expect = 3.4
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +3
Query: 600 PPPPPPPPXXXXXSXXXPPPXP 665
PPPP PP PPP P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLP 1736
Score = 22.6 bits (46), Expect(2) = 5.2
Identities = 8/18 (44%), Positives = 8/18 (44%)
Frame = +3
Query: 603 PPPPPPPXXXXXSXXXPP 656
P PPPPP PP
Sbjct: 1705 PTPPPPPMSVPPPPSAPP 1722
Score = 22.2 bits (45), Expect(2) = 5.2
Identities = 8/19 (42%), Positives = 9/19 (47%)
Frame = +3
Query: 729 PKPPPPXSXXXPXPPPPPP 785
P PP + PPPP P
Sbjct: 1718 PSAPPMPAGPPSAPPPPLP 1736
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.9 bits (59), Expect = 2.6
Identities = 19/67 (28%), Positives = 20/67 (29%), Gaps = 4/67 (5%)
Frame = +3
Query: 597 PPPPPPPPPXXXXXSXXXPPPXPXXG--XXXGXXKKKKXXXXXXXXPKPPPPXSXXXPXP 770
PP PP P S PP P + P P S P P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198
Query: 771 P--PPPP 785
P PPPP
Sbjct: 199 PKVPPPP 205
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 23.8 bits (49), Expect(2) = 2.6
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +3
Query: 729 PKPPPPXSXXXPXPPPPP 782
P PPP S P PP P
Sbjct: 744 PPPPPVRSSISPSMPPAP 761
Score = 22.2 bits (45), Expect(2) = 2.6
Identities = 9/25 (36%), Positives = 9/25 (36%)
Frame = +3
Query: 585 KXXXPPPPPPPPPXXXXXSXXXPPP 659
K P PP P P PPP
Sbjct: 724 KPQVTPAPPTPAPTPAVKHHPPPPP 748
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 27.1 bits (57), Expect = 4.5
Identities = 17/58 (29%), Positives = 18/58 (31%)
Frame = +3
Query: 609 PPPPPXXXXXSXXXPPPXPXXGXXXGXXKKKKXXXXXXXXPKPPPPXSXXXPXPPPPP 782
PPPP S PPP G + P P S P P PPP
Sbjct: 139 PPPPVRPNVMSQMPPPPSYSSS---GSYSQTYQSNANYTASSPLPTASANAPLPVPPP 193
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 600 PPPPPPPPXXXXXSXXXPP 656
PPPPPPPP S P
Sbjct: 370 PPPPPPPPELLNHSPKSRP 388
Score = 26.6 bits (56), Expect = 6.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 595 PPPPPPPP 618
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 6.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 597 PPPPPPPP 620
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 26.6 bits (56), Expect = 6.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 598 PPPPPPPP 621
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -3
Query: 675 PXXXGGGGGGXXXXXXXXGGGGGGGGG 595
P GG GG GG GG GGG
Sbjct: 5 PGSRGGRGGSRGGRGGFNGGRGGFGGG 31
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.157 0.581
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,348,366
Number of Sequences: 5004
Number of extensions: 39120
Number of successful extensions: 713
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 563787506
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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