Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_O16
(863 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 64 2e-11
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 30 0.49
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.64
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 28 1.5
SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr 1... 27 2.6
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 27 2.6
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac... 27 2.6
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 6.0
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 6.0
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 26 7.9
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 26 7.9
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 7.9
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 64.1 bits (149), Expect = 2e-11
Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Frame = +1
Query: 127 DIKSVLIVDGVGAKCAELLNAYGIATT-TKAKISKEELLMEIPNHDALVVRSATQVTKEV 303
DIK +L+++ V L G K +S+++L+ +I A+ +RS T++T+ V
Sbjct: 55 DIK-ILLLENVNQSALSNLKDEGYQVEFLKTSMSEDDLVEKIKGVHAIGIRSKTRLTRRV 113
Query: 304 LDAGVKLKVVGRAGAGVDNIDVXSAGKKGVGVINAPGANALSACELTCTLMLVLARHV 477
L+A L V+G G + +D+ A ++G+ V N+P AN+ S EL ++ LAR V
Sbjct: 114 LEAADSLIVIGCFCIGTNQVDLDFAAERGIAVFNSPYANSRSVAELVIGYIISLARQV 171
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 29.9 bits (64), Expect = 0.49
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +2
Query: 44 SVAARRSEEAHTSIKLNNDSTTKPRWSWTLSRF*SSTGLAPSVPNSST 187
SVAA R+ A ++ NND T P+ + +S F S G + + P T
Sbjct: 415 SVAALRARFAKANVSENNDPPTFPKTAAKISSFNSKAGTSFAKPRPFT 462
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.5 bits (63), Expect = 0.64
Identities = 22/92 (23%), Positives = 47/92 (51%)
Frame = -1
Query: 578 PAKAKDGEXXPSELAASVQSPXPTCQXSAQ*SWTTWRARTNINVQVSSHALSALAPGALI 399
PA + S ++ SV+ P + S+ ++ + + +SS + SA +P + +
Sbjct: 439 PASTRVQTTTVSSISTSVKQPTASVASSSVSVPSSSSVQPQSSTPISSSS-SASSPQSTL 497
Query: 398 TPTPFLPAEXTSMLSTPAPARPTTFSFTPASN 303
+ + + +E +S L + + A P+T S TP+S+
Sbjct: 498 STSSEVVSEVSSTLLSGSSAIPSTSSSTPSSS 529
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 295 KEVLD-AGVKLKVVGRAGAGVDNIDVXSAGKKGVGVINAPGANALSACELTCTLML 459
KE++D +K + GAG + +DV + +G+ V + P A + ++ LML
Sbjct: 71 KEIIDNLPPSVKFICHLGAGYETVDVAACTARGIQVSHVPKAVDDATADVGIFLML 126
>SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr
1|||Manual
Length = 226
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 17 HYREFLKIWSVAARRSEEAHTSIKLNN 97
H+REF KIW A R E ++SI+L++
Sbjct: 27 HFREFRKIWETA--RVELEYSSIQLDS 51
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 380 PAEXTSMLSTPAPARPTTFSFTPASNTS 297
P+ ++ +PAP T S +PA+NTS
Sbjct: 125 PSSISNSSESPAPINSATASMSPANNTS 152
>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 340
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +1
Query: 319 KLKVVGRAGAGVDNIDVXSAGKKGVGVINAPGANALSACELTCTLMLVLAR 471
KL V G AG +N+DV A + GV V N P + L + R
Sbjct: 85 KLFVTG--AAGYNNVDVDWATRNGVYVANTPNGPTEGTANMNLMLFMCTLR 133
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 6.0
Identities = 19/68 (27%), Positives = 27/68 (39%)
Frame = -1
Query: 461 TNINVQVSSHALSALAPGALITPTPFLPAEXTSMLSTPAPARPTTFSFTPASNTSLVT*V 282
T N S+ L P +T TP T+ S P + P T S S+++ VT
Sbjct: 528 TTTNCTTSTSVLYTSTP---VTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTST 584
Query: 281 AERTTRAS 258
TT +
Sbjct: 585 PVTTTNCT 592
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 6.0
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -1
Query: 440 SSHALSALAPGALITPTPFLPAEXTSMLSTPAPARPTTFSFTPASNTS 297
S H + P L P+ F+ A+ S L TP P P + S P S
Sbjct: 152 SDHPIDLDNPEHLTPPSSFITAKQLSRLPTPLP--PPSSSSLPTGTIS 197
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.8 bits (54), Expect = 7.9
Identities = 23/85 (27%), Positives = 39/85 (45%)
Frame = -1
Query: 374 EXTSMLSTPAPARPTTFSFTPASNTSLVT*VAERTTRASWLGISIRSSSLEXXXXXXXXX 195
E +S+ +T +P +TF T +S +S+ T + ++ S +S+ SSS
Sbjct: 238 ESSSLTNTVSPTE-STFYETKSSTSSVPTQTIDSSSFTSSTPVSLTSSSTS--------S 288
Query: 194 XXXLRSSAHLAPTPSTIKTDLMSTT 120
+ S + TPSTI T + T
Sbjct: 289 SGSSQDSTTIDSTPSTIATSTLQPT 313
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.8 bits (54), Expect = 7.9
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = -2
Query: 547 PASSLPVYRARXPP--ASXQRSEAGPRGEPEPTSTCRSARTRSA 422
P S+LP PP A Q + RGEP + S RTR+A
Sbjct: 447 PTSALPPIGKFAPPTTAKAQPAPEKRRGEPAVQTRNHSKRTRTA 490
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 401 ITPTPFLPAEXTSMLSTPAPARPTTFSFTPASNTSLV 291
+TPTP A T+ + A +T S T + TS+V
Sbjct: 34 VTPTPLPSANVTTTSFSSASTETSTHSVTSTNITSIV 70
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,781,477
Number of Sequences: 5004
Number of extensions: 46613
Number of successful extensions: 147
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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