Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_O16
(863 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7265| Best HMM Match : 2-Hacid_dh (HMM E-Value=0.00052) 60 2e-15
SB_12714| Best HMM Match : 2-Hacid_dh (HMM E-Value=2.6e-12) 50 2e-06
SB_36985| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39) 48 1e-05
SB_36986| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_57858| Best HMM Match : RNA_pol_A_CTD (HMM E-Value=5.7) 33 0.30
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.69
SB_4699| Best HMM Match : Lig_chan (HMM E-Value=1.1) 32 0.69
SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_20903| Best HMM Match : Extensin_2 (HMM E-Value=0.3) 30 2.1
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05) 30 2.1
SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_2661| Best HMM Match : EGF_CA (HMM E-Value=0.0062) 29 4.9
SB_40435| Best HMM Match : DUF1677 (HMM E-Value=4.2) 29 6.5
SB_51168| Best HMM Match : Extensin_2 (HMM E-Value=1.3) 29 6.5
SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29) 29 6.5
SB_27574| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.5
SB_1703| Best HMM Match : Extensin_2 (HMM E-Value=0.26) 29 6.5
SB_45277| Best HMM Match : DUF912 (HMM E-Value=9.2) 28 8.5
SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38) 28 8.5
SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6) 28 8.5
SB_43283| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69) 28 8.5
>SB_7265| Best HMM Match : 2-Hacid_dh (HMM E-Value=0.00052)
Length = 126
Score = 60.1 bits (139), Expect(2) = 2e-15
Identities = 27/49 (55%), Positives = 38/49 (77%)
Frame = +1
Query: 256 HDALVVRSATQVTKEVLDAGVKLKVVGRAGAGVDNIDVXSAGKKGVGVI 402
+D L+VRSAT+V+++V+ AG LK++GRAG GVDNID +A GV V+
Sbjct: 77 YDGLIVRSATKVSEDVIKAGKNLKIIGRAGTGVDNIDTVAASLHGVLVM 125
Score = 40.3 bits (90), Expect(2) = 2e-15
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +1
Query: 124 VDIKSVLIVDGVGAKCAELLNAYGIATTTKAKISKEELLMEIP 252
+++K VLI D V + C +L G+ K+SKEEL+ EIP
Sbjct: 4 LELKRVLISDSVDSCCKTILERNGVTVDVNTKLSKEELVSEIP 46
>SB_12714| Best HMM Match : 2-Hacid_dh (HMM E-Value=2.6e-12)
Length = 189
Score = 50.4 bits (115), Expect = 2e-06
Identities = 25/64 (39%), Positives = 36/64 (56%)
Frame = +1
Query: 289 VTKEVLDAGVKLKVVGRAGAGVDNIDVXSAGKKGVGVINAPGANALSACELTCTLMLVLA 468
V+ +LD LKV+ GAG D ID+ +A K+G+ V N PG ++ L+L A
Sbjct: 58 VSNSLLDDLPSLKVISSIGAGFDRIDIPAATKRGIRVGNTPGVVQDCTADMAIGLLLASA 117
Query: 469 RHVV 480
RH+V
Sbjct: 118 RHIV 121
>SB_36985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/65 (36%), Positives = 42/65 (64%)
Frame = +1
Query: 289 VTKEVLDAGVKLKVVGRAGAGVDNIDVXSAGKKGVGVINAPGANALSACELTCTLMLVLA 468
+T+E++ + LKV+ GAG+DNID+ +A ++G+ V N PG + A + L++ A
Sbjct: 62 ITEELMASLPNLKVISNIGAGIDNIDLEAAKRRGILVGNTPGISDCLA-DFAWALLMAAA 120
Query: 469 RHVVQ 483
R+V+Q
Sbjct: 121 RNVIQ 125
>SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39)
Length = 401
Score = 47.6 bits (108), Expect = 1e-05
Identities = 30/94 (31%), Positives = 44/94 (46%)
Frame = +3
Query: 525 YTGSELAGXXLXILGLGRVGXXVATXMYAFXMNIIGFQPFRVC*SVRPVPLHXXGAGGXF 704
+ G+EL G L I+GLGR+G VA M ++ + IG+ P + +
Sbjct: 1 FMGNELFGKTLAIIGLGRIGREVALRMQSYGVKTIGYDPLVSPQDAAESNIEWMETEKIW 60
Query: 705 GPLTDXITLHTPVIEXTXXLYPXPMS*XQCXKGV 806
PL D IT+H P+I T + + C KGV
Sbjct: 61 -PLADYITVHVPLIPPTKGML-NDKTIGMCKKGV 92
>SB_36986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = +1
Query: 289 VTKEVLDAGVKLKVVGRAGAGVDNIDVXSAGKKGVGVINAPGANALSACELTCTLMLVLA 468
V ++D +L+V+ AG GVD+ID+ +A +G+ V N PG + L+L A
Sbjct: 59 VDSALMDCYPELRVISSAGVGVDHIDLAAATIRGIRVGNTPGVVQECTADHAIGLLLASA 118
Query: 469 RHV 477
R +
Sbjct: 119 RKI 121
>SB_57858| Best HMM Match : RNA_pol_A_CTD (HMM E-Value=5.7)
Length = 280
Score = 33.1 bits (72), Expect = 0.30
Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +2
Query: 20 YREFLKIWSVAARRSEEAHTSIKLNNDSTTKPR--WSWTLSRF*SSTGLAP 166
YR+F K++ + +++++ + + LN+D KP+ WS+ S+ G+ P
Sbjct: 31 YRKFQKLFKIKMKKAQDEYIADTLNSDLKEKPKKFWSYIKSKRQDQVGVPP 81
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 31.9 bits (69), Expect = 0.69
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Frame = -1
Query: 548 PSELAASVQSPXPTCQXSAQ*SWTTWRARTNINVQVSSHALSALAPGALITPTPFLPAEX 369
P+ + P PT S + TT T + + A TPTP P
Sbjct: 29 PTPTTHTPTKPSPTTPTSTAPTQTT-PTPTTPSPTAPTQTTPTPATPTPTTPTPKTPTPT 87
Query: 368 TSMLSTPAPA-RPTTFSFTPASNT 300
TS L+ P PA PT TP ++T
Sbjct: 88 TSTLTKPTPATTPTPTKPTPTAHT 111
Score = 28.3 bits (60), Expect = 8.5
Identities = 21/98 (21%), Positives = 31/98 (31%)
Frame = -1
Query: 593 HXXADPAKAKDGEXXPSELAASVQSPXPTCQXSAQ*SWTTWRARTNINVQVSSHALSALA 414
H P+ P++ + +P PT + T T + +
Sbjct: 34 HTPTKPSPTTPTSTAPTQTTPTPTTPSPTAPTQTTPTPATPTPTTPTPKTPTPTTSTLTK 93
Query: 413 PGALITPTPFLPAEXTSMLSTPAPARPTTFSFTPASNT 300
P TPTP P +TP P T TP + T
Sbjct: 94 PTPATTPTPTKPTPTAHTPTTPTPTAHTPTKPTPKTPT 131
>SB_4699| Best HMM Match : Lig_chan (HMM E-Value=1.1)
Length = 186
Score = 31.9 bits (69), Expect = 0.69
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 168 VCRTPQRLRNRHHHQGQDLQGRTSYGDTQPR 260
+CR+ + RHHH L G +SYG P+
Sbjct: 113 LCRSKRPYGLRHHHHASGLMGASSYGMAMPK 143
>SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1240
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = -1
Query: 449 VQVSSHALSAL-APGALITPTPFLPAEX--TSMLSTPAPARPTTFSFTPASNT 300
VQ +++ +S + AP A + PT PA+ T STPA + T TPA T
Sbjct: 703 VQSATNVVSVMSAPPAYVPPTSAPPAQTQVTDTYSTPAQTQVTDTYSTPAQTT 755
>SB_20903| Best HMM Match : Extensin_2 (HMM E-Value=0.3)
Length = 713
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -2
Query: 568 PRMXRXCPASSLPVYRARXPPASXQRSEAGPRG-EPEPTSTCRSARTRSAHWR 413
P M R PA+ LPV R PP+ R G +P+ T+T R + HW+
Sbjct: 571 PPMPR--PATELPVMRTSGPPSKFSRKATGRLVLQPQKTTTGRLGEL-AQHWQ 620
>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
Length = 819
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -1
Query: 440 SSHALSALAPGALITPTPFLPAEXTSMLSTPAPARPTT 327
SS +++ +L TP+ P+ T LSTP P++P+T
Sbjct: 196 SSSSITTTKLSSLSTPSLSTPSLSTPSLSTPLPSKPST 233
>SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2353
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = -2
Query: 520 ARXPPASXQRSEAGPRGEPEPTSTCRSARTRSAHWR 413
A PPAS EA P P T RS+R A WR
Sbjct: 669 ADSPPASVLTMEAAPESMQAPRLTPRSSREVEALWR 704
>SB_2661| Best HMM Match : EGF_CA (HMM E-Value=0.0062)
Length = 87
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 286 QVTKEVLDAGVKLKVVGRAGAGVDNIDVXSAGKKGVGVINAPGANALSACELTC 447
++T++ +D K K+ A A VD G +N PG+ AC +C
Sbjct: 5 EITRKFVDYAEKAKLRASAQAHVDECQEVDKCSGGEYCVNEPGSFRCEACHESC 58
>SB_40435| Best HMM Match : DUF1677 (HMM E-Value=4.2)
Length = 93
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -3
Query: 513 SHLPAFSAVKLDHVASQNQHQRAGQLARAQRIGARSV 403
+HLP A+K+D + + ++ G A+ +R+G R V
Sbjct: 12 THLPKQLALKMDGAQASHLYRAVGADAKLRRVGGRGV 48
>SB_51168| Best HMM Match : Extensin_2 (HMM E-Value=1.3)
Length = 288
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = -2
Query: 580 TLPRPRMXRXCPASSLPVYRA--RXPPASXQRSEAGPRGEPEPTSTCRSARTRS 425
T P R S +P + A + PP R+ + P PEP SAR RS
Sbjct: 47 TAPEQDPPRGQHQSRIPTWTAPQQDPPVDSARARSPPWTAPEPNPPVDSARARS 100
>SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29)
Length = 1202
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 331 PPSASRLRPTPLWSLELLNAQPERRGWVSP 242
PP + +LRP+P SL ++NA G SP
Sbjct: 1006 PPVSKKLRPSPPDSLPIMNAGTPSSGHFSP 1035
>SB_27574| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1258
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +1
Query: 139 VLIVDGVGAKCAELLNAYGIATTTKAKISKEELLMEIPNHDALVVRSATQVTKEVLDAGV 318
V+IVD G KC LL+ ++ K ++ E+ D ++ T+EV A +
Sbjct: 303 VVIVDVEGIKCRALLDTGAGVPALLDRLKKRQVTREVRKIDMML----GSTTREVELANI 358
Query: 319 KLKVVG 336
+K VG
Sbjct: 359 TIKAVG 364
>SB_1703| Best HMM Match : Extensin_2 (HMM E-Value=0.26)
Length = 307
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = -2
Query: 580 TLPRPRMXRXCPASSLPVYRA--RXPPASXQRSEAGPRGEPEPTSTCRSARTRS 425
T P R S +P + A + PP R+ + P PEP SAR RS
Sbjct: 47 TAPEQDPPRGQHQSRIPTWTAPQQDPPVDSARARSPPWTAPEPNPPVDSARARS 100
>SB_45277| Best HMM Match : DUF912 (HMM E-Value=9.2)
Length = 188
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 396 SDQRSGRQCAERVRADLHVDVGSG 467
SD R R CA+ +RA H++ G G
Sbjct: 48 SDSRCQRGCAQPIRARRHIEAGMG 71
>SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38)
Length = 839
Score = 28.3 bits (60), Expect = 8.5
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Frame = -1
Query: 569 AKDGEXXPSELAASVQSPXPTCQXSAQ*SWTTWRARTNINVQVSSHALSALAPGALITP- 393
A + P AAS + P + + TT + + ++ ++ ++ +AP P
Sbjct: 489 ASETTVAPKTTAASEATLAPETTVAPE---TTAAPESTLALETTAAPVTTVAPETTAAPD 545
Query: 392 TPFLPAEXTSMLSTPAPARPTTFSFTPASNTS 297
TP +P ++ ST AP TPA T+
Sbjct: 546 TPIVPETTVALESTVAPEITVVPETTPALETT 577
>SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 28.3 bits (60), Expect = 8.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 177 TPQRLRNRHHHQGQDLQG 230
TPQ+L HH++G D+QG
Sbjct: 254 TPQKLPFHHHNKGYDIQG 271
>SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6)
Length = 156
Score = 28.3 bits (60), Expect = 8.5
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Frame = -1
Query: 545 SELAASVQSPXPTCQXSAQ*SWTTWRARTNINVQVSSHALSALAPGALITPT--PFLPAE 372
SE ++QS T + + A ++ ++ AP A +TPT P P
Sbjct: 8 SEAHYNIQSKSKTSAARSSVIRSLMSAEASLTAASAAPVTPTAAPAAPVTPTAAPAAPVT 67
Query: 371 XTS-----MLSTPAPARPTTFSFTPASNTSLVT*VAERTT 267
T+ + T APA P T + PA+ VT A R T
Sbjct: 68 PTAAPAARVTPTAAPAAPVTPTAAPAAR---VTPTAARVT 104
>SB_43283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 278
Score = 28.3 bits (60), Expect = 8.5
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
Frame = -1
Query: 548 PSELAASVQSPXPTCQXSAQ*SWTTWRARTNINVQVSSHALSALAPGALITPTPFLPAEX 369
P E + +P T ++ TT A + ++ L+A +P TPT P +
Sbjct: 175 PVETTSLASTPVETTSLASTPVDTTLTASSPVDT-----TLTASSP-VETTPTASPPVKT 228
Query: 368 TSMLSTPAPARPTTFSF-TPASNTSLVT*VAERTT 267
T + +TP A PT TP TS T + T+
Sbjct: 229 TPLAATPVYATPTAPELTTPLDTTSTATTPVDTTS 263
>SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69)
Length = 404
Score = 28.3 bits (60), Expect = 8.5
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Frame = -1
Query: 545 SELAASVQSPXPTCQXSAQ*SWTTWRARTNINVQVSSHALSALAPGALITPT--PFLPAE 372
SE ++QS T + + A ++ ++ AP A +TPT P P
Sbjct: 165 SEAHYNIQSKSKTSAARSSVIRSLMSAEASLTAASAAPVTPTAAPAAPVTPTAAPAAPVT 224
Query: 371 XTS-----MLSTPAPARPTTFSFTPASNTSLVT*VAERTT 267
T+ + T APA P T + PA+ VT A R T
Sbjct: 225 PTAAPAARVTPTAAPAAPVTPTAAPAAR---VTPTAARVT 261
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,240,543
Number of Sequences: 59808
Number of extensions: 411305
Number of successful extensions: 1292
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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