Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_O14
         (859 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    64   4e-09
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    62   1e-08
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    58   3e-07
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    45   0.002
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    44   0.004
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    41   0.046
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.080
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    35   2.3  
UniRef50_Q12GC2 Cluster: Putative uncharacterized protein precur...    34   5.3  
UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1; Lentisp...    34   5.3  
UniRef50_A4Q8I4 Cluster: MobA protein; n=1; Listonella anguillar...    34   5.3  
UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1; ...    34   5.3  
UniRef50_UPI000069E94D Cluster: TATA-binding protein associated ...    33   9.2  
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    33   9.2  

>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 64.1 bits (149), Expect = 4e-09
 Identities = 45/92 (48%), Positives = 49/92 (53%)
 Frame = +1

Query: 313 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPQNQGITQERTCEXKASKRP 492
           R   +C  G +PLPRSLTR ARSFGCGERY+LT           G   E T     SK  
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT--------DGDGNFLEDT-RKTLSKEE 76

Query: 493 XTVKRPRCWRFSIGLRPPXTSITKIDAXVXGG 588
               RPR  RFSIG   P TSI K DA + GG
Sbjct: 77  I---RPRRSRFSIG-SAPLTSIAKSDAQISGG 104


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 62.5 bits (145), Expect = 1e-08
 Identities = 29/38 (76%), Positives = 29/38 (76%)
 Frame = -2

Query: 489 PFAGLXLTCSFLRYPLILWITVLPPLSELIPLAAAERP 376
           P     LTCSF  YPLILWITVLPPLSEL PLAA ERP
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 58.0 bits (134), Expect = 3e-07
 Identities = 32/57 (56%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = +1

Query: 289 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQGITQ 456
           CI + A AR EAV VL ALPL RS TRC RS GCG      +  R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +2

Query: 92  DPDMIRYIDEFGQTTTRMQ 148
           DPDMIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 44.4 bits (100), Expect = 0.004
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +3

Query: 408 HSKAVIRLSTESGDNAGKNM 467
           HSKAVIRLSTESGDNAGKNM
Sbjct: 40  HSKAVIRLSTESGDNAGKNM 59


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 40.7 bits (91), Expect = 0.046
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +2

Query: 287 SALMNRPTRGERRFAYW 337
           +ALMNRPTRGERRFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.9 bits (89), Expect = 0.080
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = -3

Query: 359 ERGSGRAPNTQTASPRALADSLMQ 288
           +R +  APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 35.1 bits (77), Expect = 2.3
 Identities = 21/36 (58%), Positives = 22/36 (61%)
 Frame = +1

Query: 481 SKRPXTVKRPRCWRFSIGLRPPXTSITKIDAXVXGG 588
           SK+  T    R  RFSIG   P TSITKIDA V GG
Sbjct: 2   SKKQSTGTSQRRCRFSIG-SAPLTSITKIDAQVRGG 36


>UniRef50_Q12GC2 Cluster: Putative uncharacterized protein
           precursor; n=2; Polaromonas|Rep: Putative
           uncharacterized protein precursor - Polaromonas sp.
           (strain JS666 / ATCC BAA-500)
          Length = 268

 Score = 33.9 bits (74), Expect = 5.3
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -2

Query: 498 GSWPFAGLXLTCSFLRYP---LILWITVLPPLSELIPLAAAERP 376
           G W  +G  L    L++    LI+W+  LPPL++ IP+A+ + P
Sbjct: 158 GVWLSSGNALPWGLLQFGGMGLIVWLACLPPLADEIPMASGDSP 201


>UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1;
           Lentisphaera araneosa HTCC2155|Rep: Probable ECF sigma
           factor - Lentisphaera araneosa HTCC2155
          Length = 201

 Score = 33.9 bits (74), Expect = 5.3
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +2

Query: 170 EICDAIALFVTIISCNKQVNNNNCIHFMFQVQGEVWEVFSALMNRPTRGERRFAYW 337
           +  DA   F+ I   N  +N+++C   + +V  +VWE  +     P RG  +F YW
Sbjct: 32  DFSDAYRRFIYIALRNNGLNHHDCEEVVQRVMIKVWEKIARFKYNPGRG--KFRYW 85


>UniRef50_A4Q8I4 Cluster: MobA protein; n=1; Listonella anguillarum
           serovar O2|Rep: MobA protein - Listonella anguillarum
           serovar O2
          Length = 548

 Score = 33.9 bits (74), Expect = 5.3
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -1

Query: 205 NGYK*SNSITNFTNKAFFSLHSSCG-LSKLINVSYHVWIQLTLXKGRSAAAVPTFKS 38
           NG+K  N +       +  L++ CG L +L+  +  + + LT+ +GR A   P+ +S
Sbjct: 488 NGFKAGNGVERAVTNDYDELNAKCGHLDRLLRETDPIGLTLTMEQGRKADPTPSVRS 544


>UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1;
           Methanocorpusculum labreanum Z|Rep: Putative
           uncharacterized protein - Methanocorpusculum labreanum
           (strain ATCC 43576 / DSM 4855 / Z)
          Length = 109

 Score = 33.9 bits (74), Expect = 5.3
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = -1

Query: 250 KMNAIVVVNLFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVSYHVWIQL 86
           +MNA V +  FIAA      +  +T +   AFF L S  G    ++VSY VW  L
Sbjct: 27  RMNAWVDLAAFIAAV-----ATCVTGYVLWAFFPLGSGRGAMNFLDVSYQVWYDL 76


>UniRef50_UPI000069E94D Cluster: TATA-binding protein associated
           factor 2N (RNA-binding protein 56) (TAFII68)
           (TAF(II)68).; n=3; Xenopus tropicalis|Rep: TATA-binding
           protein associated factor 2N (RNA-binding protein 56)
           (TAFII68) (TAF(II)68). - Xenopus tropicalis
          Length = 521

 Score = 33.1 bits (72), Expect = 9.2
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 749 SGGGYGXRRXAXPKGEERADRYPVSGQGREQESAXGEXSQ 630
           S GGYG R      G+++ D Y   G G++Q    GE  Q
Sbjct: 103 SRGGYGGRFDTQSSGQQQQDSYDQHGYGQKQRIGYGETPQ 142


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 33.1 bits (72), Expect = 9.2
 Identities = 18/30 (60%), Positives = 20/30 (66%)
 Frame = +1

Query: 499 VKRPRCWRFSIGLRPPXTSITKIDAXVXGG 588
           V+ PR  RFSIG   P TSITK DA + GG
Sbjct: 44  VRGPRQSRFSIG-SAPLTSITKSDAQISGG 72


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 649,271,532
Number of Sequences: 1657284
Number of extensions: 11105521
Number of successful extensions: 25948
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 25039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25935
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 75833093035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)