Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_O13
         (855 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17298| Best HMM Match : RVT_1 (HMM E-Value=0.86)                    32   0.52 
SB_13455| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.8  
SB_21330| Best HMM Match : JmjC (HMM E-Value=0.0054)                   29   3.6  
SB_10710| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_17298| Best HMM Match : RVT_1 (HMM E-Value=0.86)
          Length = 312

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 581 MNMEVLQKIYVTKMQHGLXNPEAAAKYGIHXGKPTTSFTKPIIL 712
           M+++VLQ       +HG+  P  +   G+H G P +SF   I++
Sbjct: 158 MDLDVLQGYIELYYEHGIATPFFSLNSGVHQGDPLSSFLFIIVI 201


>SB_13455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1387

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = -3

Query: 610 VNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGTLVERFK 431
           VN +Q F    + ++   +SR+   + +R  DN D EG+ E T     T   G L + F 
Sbjct: 658 VNDIQDFAFSNNMKLNPAKSRHQAFIPLRCKDNGDREGMFEAT-----TTPGGVLCKNFW 712

Query: 430 VLSV 419
           V +V
Sbjct: 713 VKAV 716


>SB_21330| Best HMM Match : JmjC (HMM E-Value=0.0054)
          Length = 304

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +1

Query: 142 IKSKNVDAVFVEKQKKILSFFQDVSQLNTDD-EYYKIGKD---YDIEM 273
           I  + ++A  +EK K++L FF  +   N +D EY  I  +   Y +EM
Sbjct: 227 ILKEEIEAFSIEKMKEVLLFFDPIDVSNMEDFEYSHINAEDIMYSLEM 274


>SB_10710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 280 PYSFRYHSLCQF-YNIHHQCLVGSHLGRRTEFSFAFQQIRHP 158
           P+S+R    C+F   +H+ CL  +H  +  EF +   +   P
Sbjct: 68  PFSYRNKVFCRFDAAVHYDCLYVTHKKKHVEFRWLHIEFLQP 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,331,531
Number of Sequences: 59808
Number of extensions: 471902
Number of successful extensions: 1027
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)