Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_O11
         (887 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0936 + 29512562-29512576,29513009-29513336,29514117-295142...    29   4.9  
08_02_0824 + 21561699-21562415,21563294-21563362,21563424-215634...    29   6.5  

>04_04_0936 +
           29512562-29512576,29513009-29513336,29514117-29514245,
           29514451-29514965
          Length = 328

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 44  LILCSXTRYSNPALVEKSK*ISRESYFSWFVVVFATASAKPWNFFKE 184
           +IL S  R + P+LVEK +    ES + +   V +  S + W F  E
Sbjct: 140 MILKSGNRITVPSLVEKEESTDDESNYEFEYEVLSHGSDEQWEFIGE 186


>08_02_0824 +
           21561699-21562415,21563294-21563362,21563424-21563459,
           21564533-21564600,21565259-21565277,21565662-21565763,
           21566173-21566288,21566501-21566595,21568093-21568264,
           21568413-21568493,21569732-21569801,21570106-21570132
          Length = 523

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/47 (36%), Positives = 18/47 (38%)
 Frame = +3

Query: 168 GTSSRKSSAPWRGREMPSSAXXXXXXXXAQLPPSRPARPSTPVPITA 308
           GTSS  SS P R R  P            Q PP  P   S  +P  A
Sbjct: 10  GTSSSSSSLPSRRRRRPPPRLGRRRGGDDQQPPHPPKASSEALPCAA 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,162,110
Number of Sequences: 37544
Number of extensions: 301844
Number of successful extensions: 825
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)