Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_O11
         (887 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19)                   31   1.6  
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_56718| Best HMM Match : Curto_V3 (HMM E-Value=7.9)                  29   5.0  
SB_1591| Best HMM Match : 7tm_1 (HMM E-Value=6.8e-06)                  29   5.0  
SB_59209| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  

>SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19)
          Length = 648

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -2

Query: 433 TRYAICILTRTSSNGVLLILLTRGNTVPN-*LCEVQAGHVSLRA 305
           +++AICI T  +S GV LI L  G+T+ N  + E +A  +  RA
Sbjct: 454 SQHAICICTGMTSEGVCLIHLHPGSTIENRVVLEYRARTIGYRA 497


>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1974

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
 Frame = +3

Query: 153  HQRNLGTSSRKS----SAPWRGREMPSSAXXXXXXXXAQLPPSRPARPSTP 293
            H + LG  S       ++PW+ R+   S             PSRP  PS+P
Sbjct: 864  HMQELGADSESEEDEFASPWKRRQSKKSLSTFDRERLESTAPSRPTSPSSP 914


>SB_56718| Best HMM Match : Curto_V3 (HMM E-Value=7.9)
          Length = 177

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = +1

Query: 37  LRFDIVFLDSVLEPRFSRKIKMNFTRIIFFLVRCCFR 147
           L + +++L   + P     +   F R+++  + CCFR
Sbjct: 72  LSYCLLYLSHAINPLLYTSLMRQFKRVMYHKIHCCFR 108


>SB_1591| Best HMM Match : 7tm_1 (HMM E-Value=6.8e-06)
          Length = 286

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = +1

Query: 37  LRFDIVFLDSVLEPRFSRKIKMNFTRIIFFLVRCCFR 147
           L + +++L   + P     +   F R+++  + CCFR
Sbjct: 181 LSYCLLYLSHAINPLLYTSLMRQFKRVMYHKIHCCFR 217


>SB_59209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1002

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +3

Query: 165 LGTSSRKSSAPWRGREMPSSAXXXXXXXXAQLPPSRPARPSTPVPITARRLT 320
           LG S  + ++PW     P++A        A +PPS  + PS   P T    T
Sbjct: 162 LGESRNEPTSPWSPVSTPNTAGGITGQDRAPIPPS--SSPSAQPPTTTSTTT 211


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,804,284
Number of Sequences: 59808
Number of extensions: 354046
Number of successful extensions: 922
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)