Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_O11
         (887 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05910.1 68414.m00620 cell division cycle protein 48-related ...    33   0.33 
At3g09000.1 68416.m01053 proline-rich family protein                   29   3.1  
At5g48800.1 68418.m06038 phototropic-responsive NPH3 family prot...    28   9.5  
At3g07540.1 68416.m00900 formin homology 2 domain-containing pro...    28   9.5  

>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
           CDC48-related similar to SP|P54609 Cell division cycle
           protein 48 homolog {Arabidopsis thaliana}; contains Pfam
           profiles PF00004: ATPase AAA family, PF00439:
           Bromodomain
          Length = 1210

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 17/28 (60%), Positives = 19/28 (67%)
 Frame = -2

Query: 301 MGTGVLGLAGRDGGSCAYRRHRRTRADD 218
           MGT V G  GR GGS  ++RHR TR DD
Sbjct: 265 MGTRV-GRDGRRGGSRPHKRHRFTRTDD 291


>At3g09000.1 68416.m01053 proline-rich family protein
          Length = 541

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +3

Query: 150 PHQRNLGTSSRKSSAPWRGREMPSSAXXXXXXXXAQLPPSRPARPSTPVPITAR 311
           P      + S +S+ P R    PSSA           P  RP+ P+ P  ++++
Sbjct: 207 PRTTTTSSGSARSATPTRSNPRPSSASSKKPVSRPATPTRRPSTPTGPSIVSSK 260


>At5g48800.1 68418.m06038 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 614

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 99  NEFHENHIFLGSLLFSRPHQR-NLGTSSRKSSAPWRGREMPS 221
           ++ H  H+ L        HQ+ +L  SSR+S + W  R++PS
Sbjct: 2   DKHHHQHLLLQHHQHLHHHQKLSLAKSSRQSCSEWIFRDVPS 43


>At3g07540.1 68416.m00900 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 841

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
 Frame = +3

Query: 99  NEFHEN--HIFLGSLLFS--RPHQRNLGTSSRKSSAPWRGREMPSSAXXXXXXXXAQLPP 266
           N+F  N   +FL S   S  R    N+  SSR   + W   E+ ++           LPP
Sbjct: 369 NDFSRNVKSLFLSSTSASPARDFCINISESSRSLKSSWEKPELDTTQQRESAAAAVTLPP 428

Query: 267 SRPARPSTPVP 299
            +   P+ P P
Sbjct: 429 PQRPPPAMPEP 439


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,855,870
Number of Sequences: 28952
Number of extensions: 243433
Number of successful extensions: 600
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)