Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_O10
         (897 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   3.2  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    23   4.3  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   4.3  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 12/31 (38%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
 Frame = +3

Query: 750 GGAXPKQXKKXPGXPP-PEXPPXXPPPXFXP 839
           G A P         PP P+ PP   PP F P
Sbjct: 161 GPALPPTGFLCNNYPPLPQVPPLPLPPIFPP 191



 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +3

Query: 783 PGXPPPEXPPXXPPPXFXP 839
           P  PP   PP  PP    P
Sbjct: 178 PQVPPLPLPPIFPPTMINP 196


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +3

Query: 783 PGXPPPEXPPXXPPPXFXPP 842
           P   PP  P   PPP +  P
Sbjct: 17  PLLTPPHNPAYSPPPSYCDP 36


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 792 PPPEXPPXXPPPXFXP 839
           P P+ PP   PP F P
Sbjct: 176 PLPQVPPLPLPPIFAP 191


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,317
Number of Sequences: 336
Number of extensions: 1432
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24927353
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)