Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_O10
(897 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 38 0.003
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 34 0.032
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.39
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 4.8
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 8.4
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 37.5 bits (83), Expect = 0.003
Identities = 16/31 (51%), Positives = 16/31 (51%)
Frame = +3
Query: 792 PPPEXPPXXPPPXFXPPGXKKKXXPPPXPPG 884
PP PP PPP F PP PPP PPG
Sbjct: 5 PPGNPPPPPPPPGFEPP----SQPPPPPPPG 31
Score = 28.3 bits (60), Expect = 1.6
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +3
Query: 762 PKQXKKXPGXPPPEXPPXXPPPXF 833
P PG PP PP PPP +
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPGY 32
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 783 PGXPPPEXPPXXPPPXFXPPGXKKK 857
P PPP P PP PPG KK
Sbjct: 11 PPPPPPGFEPPSQPPPPPPPGYVKK 35
Score = 28.3 bits (60), Expect = 1.6
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -3
Query: 442 PPPPPXGXXKKKKKK 398
PPPPP G KK+K K
Sbjct: 25 PPPPPPGYVKKRKNK 39
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.9 bits (74), Expect = 0.032
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +3
Query: 792 PPPEXPPXXPPPXFXPPGXKKKXXPPPXPP 881
PPP PPP PPG PPP PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 29.5 bits (63), Expect = 0.68
Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Frame = +3
Query: 777 KXPGXPPPEX--PPXXPPPXFXPPGXKKKXXPPPXPP 881
K P PPP P P P PP PPP PP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.3 bits (65), Expect = 0.39
Identities = 13/39 (33%), Positives = 14/39 (35%)
Frame = +3
Query: 762 PKQXKKXPGXPPPEXPPXXPPPXFXPPGXKKKXXPPPXP 878
P + P P P P P P PP K PP P
Sbjct: 1067 PAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVP 1105
Score = 30.3 bits (65), Expect = 0.39
Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Frame = +3
Query: 756 AXPKQXKKXPGXPPPEXP----PXXPPPXFXPPGXKKKXXPPPXPP 881
A P G PP P P PPP PP K PP PP
Sbjct: 1167 AAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +3
Query: 762 PKQXKKXPGXPPPEXPPXXPPPXFXPPGXKKKXXPPPXP 878
PK P PPP P P P P PP P
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +3
Query: 783 PGXPPPEXPPXXPPPXFXPPGXKKKXXPPPXPP 881
P P P P P P PP K P PP
Sbjct: 1032 PPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPP 1064
Score = 25.8 bits (54), Expect = 8.4
Identities = 14/40 (35%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Frame = +3
Query: 762 PKQXKKXPGXPPPEXP-PXXPPPXFXPPGXKKKXXPPPXP 878
PK P P P P P P PP K PP P
Sbjct: 1095 PKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVP 1134
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +3
Query: 792 PPPEXPPXXPPPXFXPPGXKKKXXPPPXPP 881
PPP PP P + + PPP PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/36 (33%), Positives = 12/36 (33%)
Frame = +3
Query: 774 KKXPGXPPPEXPPXXPPPXFXPPGXKKKXXPPPXPP 881
KK P PPP P PPP PP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
Score = 25.8 bits (54), Expect = 8.4
Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Frame = +3
Query: 783 PGXPPPEXPPXXPP--PXFXPPGXKK-KXXPPPXPP 881
P PP PP PP P PP PP PP
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 4.8
Identities = 16/41 (39%), Positives = 16/41 (39%)
Frame = +3
Query: 756 AXPKQXKKXPGXPPPEXPPXXPPPXFXPPGXKKKXXPPPXP 878
A P Q P PPP P PPP PP PP P
Sbjct: 1697 AAPPQMSA-PTPPPP--PMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/30 (40%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Frame = +3
Query: 792 PPPEXPPXXPPPXFXP-PGXKKKXXPPPXP 878
PPP PPP P P PPP P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = +3
Query: 792 PPPEXPPXXPPPXFXPPGXKKKXXPPPXPP 881
PP PP P P PPP PP
Sbjct: 168 PPSFQPPSAAAPATSLPSDYNPPPPPPPPP 197
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 762 PKQXKKXPGXPPPEXPPXXPP 824
PKQ P PPP PP PP
Sbjct: 229 PKQADPLPAPPPP-PPPTLPP 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,534,400
Number of Sequences: 5004
Number of extensions: 16336
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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