Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_O09
         (902 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g52620.1 68414.m05941 pentatricopeptide (PPR) repeat-containi...    29   5.6  
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...    28   9.7  
At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...    28   9.7  

>At1g52620.1 68414.m05941 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 819

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
 Frame = +1

Query: 217 SENLKVSRETMSPVX-----SGPVAVLHHVDDYVELLYDDIPEKI 336
           +EN+K++ E +S V      SG ++    + DYV  LYD +P+ I
Sbjct: 127 NENVKLTHEALSHVLHAYAESGSLSKAVEIYDYVVELYDSVPDVI 171


>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 286 HVDDYVELLYDDIPEKIKDQXSFY 357
           HV +Y++LL +D PEK++   S Y
Sbjct: 202 HVSNYMKLLGEDEPEKLQTHFSAY 225


>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 286 HVDDYVELLYDDIPEKIKDQXSFY 357
           HV +Y++LL +D PEK++   S Y
Sbjct: 202 HVSNYMKLLGEDEPEKLQTHFSAY 225


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,406,986
Number of Sequences: 28952
Number of extensions: 172015
Number of successful extensions: 307
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2129873112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)