Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_O04
         (1458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   2.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   3.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   6.5  

>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.4 bits (48), Expect(2) = 2.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 1   PXPPPPPP 24
           P PPPPPP
Sbjct: 905 PTPPPPPP 912



 Score = 23.0 bits (47), Expect(2) = 2.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 13  PPPPXXPPP 39
           PPPP  PPP
Sbjct: 945 PPPPPPPPP 953


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
          Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 1  PXPPPPPPXXPPP 39
          P PPPPPP   PP
Sbjct: 9  PPPPPPPPGFEPP 21


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 1    PXPPPPPPXXPPP 39
            P PPPPP   PPP
Sbjct: 1705 PTPPPPPMSVPPP 1717


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 1   PXPPPPPPXXPPP 39
           P PPPPPP   PP
Sbjct: 236 PAPPPPPPPTLPP 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,275,163
Number of Sequences: 5004
Number of extensions: 8555
Number of successful extensions: 168
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 814742980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)