Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_O03
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    29   0.64 
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   4.5  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    27   4.5  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    26   5.9  
SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ...    26   5.9  

>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +3

Query: 483 CVXCSEI*STR--RCGSARRXIPSFDENCIWNG 575
           C+ C ++   R   CG+ +R I  +D +C W G
Sbjct: 402 CLKCFQVKPPRSYHCGACKRCINRYDHHCPWTG 434


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
 Frame = -3

Query: 706  TQAXFNSSGSWLVENISVISGSKDRSHLLSFLYEQI---------FASGVVRIPFQIQFS 554
            T A F    +  VE + +   +K RSH+L   Y+ +         F  GV+ IPFQI+  
Sbjct: 833  TWAHFELKVASHVEYMQLSVKAKARSHILLLYYDPLEFLISIHSCFHLGVIPIPFQIREI 892

Query: 553  SKL 545
            S+L
Sbjct: 893  SQL 895


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 131 LFFCWFEFAMFGCN*KYTPAYSCAGQSMTQILR 33
           L+F +    +FGC+  YT  +  AG+ + + +R
Sbjct: 144 LYFIYIAIGVFGCSYIYTVTFIIAGERIARRIR 176


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +2

Query: 20  TIGNSLRFESSTGRHTNRLAYISN--YTRTSRIQTNKKKASMKFLSSA 157
           T+G S+RFE  TG  T  + Y+++    R S +Q N +K S+  +  A
Sbjct: 568 TVGYSIRFEDVTGPDT-VIKYMTDGVLLRESLMQNNLEKYSVIIMDEA 614


>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
           Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 599 LRQWRSSDSIPDTVLIKAWNXS 534
           L +W +SD+I  TV++ A+N S
Sbjct: 53  LEKWSTSDNIQITVIVPAYNES 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,964,563
Number of Sequences: 5004
Number of extensions: 51711
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)