Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_O01
(904 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.010
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.17
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.22
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.52
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 6.4
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 23 7.0
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.5 bits (78), Expect = 0.010
Identities = 21/62 (33%), Positives = 24/62 (38%)
Frame = +2
Query: 494 KKKXXXXXPPPPPPXXXXXXXXPGAXAPLFXXGXXPXPXPFXXKXPXXPPPPXXXPAPXP 673
++K PPPPPP P AP+ P P P P PPPP A P
Sbjct: 724 QQKLLLKSPPPPPPAVIVPTPAP---API----PVPPPAPIMGGPPPPPPPPGVAGAGPP 776
Query: 674 XP 679
P
Sbjct: 777 PP 778
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/55 (27%), Positives = 17/55 (30%)
Frame = +1
Query: 520 PPPPPPXXLXXXXXXXXXXXXXXXXXPXXXSLXXXXXXTPPPPXXXPXPPPAXPP 684
PPPPPP + P + PPP PPP PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVP-----PPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.5 bits (68), Expect = 0.17
Identities = 20/64 (31%), Positives = 20/64 (31%), Gaps = 2/64 (3%)
Frame = +2
Query: 488 PPKKKXXXXXPPPPPPXXXXXXXXPGAXAP--LFXXGXXPXPXPFXXKXPXXPPPPXXXP 661
PP K PP P P P AP G P P P P P P P
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKP-SVAAPPVPAPSGAPP 1160
Query: 662 APXP 673
P P
Sbjct: 1161 VPKP 1164
Score = 31.5 bits (68), Expect = 0.17
Identities = 19/64 (29%), Positives = 19/64 (29%), Gaps = 2/64 (3%)
Frame = +2
Query: 488 PPKKKXXXXXPPPPPPXXXXXXXXPGAXAPLF--XXGXXPXPXPFXXKXPXXPPPPXXXP 661
PP K PP P P P AP G P P P P P P
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP 1180
Query: 662 APXP 673
P P
Sbjct: 1181 VPKP 1184
Score = 29.9 bits (64), Expect = 0.52
Identities = 21/64 (32%), Positives = 21/64 (32%)
Frame = +2
Query: 488 PPKKKXXXXXPPPPPPXXXXXXXXPGAXAPLFXXGXXPXPXPFXXKXPXXPPPPXXXPAP 667
PP K P PPP P AP G P P P P P P P P
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAP---SGAPPVPAP--SGIPPVPKPSVAAP-P 1103
Query: 668 XPXP 679
P P
Sbjct: 1104 VPKP 1107
Score = 29.5 bits (63), Expect = 0.68
Identities = 18/64 (28%), Positives = 18/64 (28%), Gaps = 2/64 (3%)
Frame = +2
Query: 488 PPKKKXXXXXPPPPPPXXXXXXXXPGAXAPLF--XXGXXPXPXPFXXKXPXXPPPPXXXP 661
PP K PP PPP P P P P P P P P
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238
Query: 662 APXP 673
P P
Sbjct: 1239 VPAP 1242
Score = 27.1 bits (57), Expect = 3.6
Identities = 18/65 (27%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Frame = +2
Query: 488 PPKKKXXXXXPP-PPPPXXXXXXXXPGAXAPLFXXGXXPXPXPFXXKXPXXPPPPXXXPA 664
PP K PP P P P P+ P P P P P P
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAP- 1150
Query: 665 PXPXP 679
P P P
Sbjct: 1151 PVPAP 1155
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.1 bits (67), Expect = 0.22
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = +2
Query: 518 PPPPPPXXXXXXXXPGAXAPLFXXGXXPXPXPFXXKXPXXPPPPXXXPAPXPXP 679
PPPPPP P P P P P PP AP P P
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365
Score = 29.5 bits (63), Expect = 0.68
Identities = 20/66 (30%), Positives = 20/66 (30%), Gaps = 2/66 (3%)
Frame = +2
Query: 488 PPKKKXXXXXPPPPP--PXXXXXXXXPGAXAPLFXXGXXPXPXPFXXKXPXXPPPPXXXP 661
PP P PP P GA A P P P PP P P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474
Query: 662 APXPXP 679
AP P P
Sbjct: 475 APPPAP 480
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/55 (27%), Positives = 15/55 (27%)
Frame = +1
Query: 520 PPPPPPXXLXXXXXXXXXXXXXXXXXPXXXSLXXXXXXTPPPPXXXPXPPPAXPP 684
PP PP P L PP P P PPPA P
Sbjct: 428 PPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 0.52
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 634 TPPPPXXXPXPPPAXPPXXXXXP 702
TPPPP PPP+ PP P
Sbjct: 1706 TPPPPPMSVPPPPSAPPMPAGPP 1728
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 6.4
Identities = 17/59 (28%), Positives = 17/59 (28%), Gaps = 4/59 (6%)
Frame = +1
Query: 520 PPPPPPXXLXXXXXXXXXXXXXXXXXPXXXSLXXXXXXTP----PPPXXXPXPPPAXPP 684
PPPPPP S TP P P P PPP PP
Sbjct: 190 PPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPPTLPP 248
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 23.0 bits (47), Expect(2) = 7.0
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = +2
Query: 629 PXXPPPPXXXPAPXPXP 679
P PPPP P P P
Sbjct: 10 PPPPPPPGFEPPSQPPP 26
Score = 21.0 bits (42), Expect(2) = 7.0
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +2
Query: 518 PPPPPP 535
PPPPPP
Sbjct: 9 PPPPPP 14
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.154 0.546
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,631,957
Number of Sequences: 5004
Number of extensions: 23706
Number of successful extensions: 213
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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