Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_N23
(850 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha... 30 0.36
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 29 1.1
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 2.5
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 27 4.4
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 26 5.9
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces... 26 5.9
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 26 5.9
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 5.9
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 7.8
>SPAC6B12.11 |drc1|sld1|DNA replication protein
Drc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 30.3 bits (65), Expect = 0.36
Identities = 23/92 (25%), Positives = 38/92 (41%)
Frame = +2
Query: 230 QGDNVPRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTVDIGLDQP 409
+ + P+AP + P +D L P + R V N + + I SH +DQ
Sbjct: 83 EANESPKAPRNDYLQVTPKTVDKSLLGPTPQLSRRVLNLLEDMSPIADSH------VDQI 136
Query: 410 IESHRNTRDLRFLYPRGKLPVPTLPPFNPKPI 505
+ NT ++ +PT P NP+P+
Sbjct: 137 SDIKHNTSEI------SSTMIPTTPSKNPEPV 162
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 524 RYRRHASEDQEELRQYNEHFLIPRDIF 604
RY+R ASE E L +++ HF I +F
Sbjct: 99 RYKRDASESDELLNEFSNHFGISDPLF 125
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.5 bits (58), Expect = 2.5
Identities = 18/69 (26%), Positives = 29/69 (42%)
Frame = +2
Query: 275 ILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTVDIGLDQPIESHRNTRDLRFLYP 454
+LPS + D L +R + N S++H +I + HR + + P
Sbjct: 2310 VLPSDLRDELLFQEAVQMRLFDHATRNNNSVDHEVEMEEIDQGGTVSEHRE----KSVKP 2365
Query: 455 RGKLPVPTL 481
K+PVP L
Sbjct: 2366 VKKIPVPNL 2374
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = -2
Query: 369 SMDASLFSGLVTL--RTYLRFGSSCTSSIFEGRIGWSAVLGARGTLS 235
S + SLFS R RF F G++GW +LG+ S
Sbjct: 347 SSNTSLFSNFTFFLSREVPRFSLEFVIRAFGGKVGWDPILGSGSPFS 393
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 26.2 bits (55), Expect = 5.9
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = -3
Query: 236 HLDTAIAVPGQLVALYVLSGAVLAVA*RSAG*TSGTK---PEQRTAPELN 96
H D IAVPG L+ + L A R G G+K PE T E+N
Sbjct: 305 HNDLKIAVPGGLIGVGTTVDPTLCRADRLVGQVLGSKGNLPEVYTELEIN 354
>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 564
Score = 26.2 bits (55), Expect = 5.9
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +2
Query: 338 TNPENNEA-SIEHSHHTVDIGLDQPIESHRNTRDLRFLYPRGKLPVPTLPPFN 493
TN NE S H T+ +G D+ + + +YP K+ TLP N
Sbjct: 446 TNYTANEVVSDVFGHRTLTVGADKTLTASMTNGYPLIMYPHSKMSGFTLPTVN 498
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 166 ANTAPDNTYSATSWPGTAMAVSR*QCSSCAKYRRPSD 276
A+ N+ S+ ++ A A+SR +CS C K ++ D
Sbjct: 317 ASEVNPNSTSSVTFSDFAAAISRSRCSRCKKSKKGCD 353
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = -1
Query: 475 WNRQFPSRVQKPQVPCVTVALDRLVKSNINCMM*MFNGRLVIFWI 341
W + + K +P V++A KSN N + ++ G + WI
Sbjct: 2770 WRQSVFKSINKVFLPLVSIAQQSTNKSNTNSVSYLYRGYHELAWI 2814
>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 25.8 bits (54), Expect = 7.8
Identities = 23/85 (27%), Positives = 37/85 (43%)
Frame = +3
Query: 303 SSIQTEGMFAVSPIQKITRRPLNIHIIQLILDLTSRSRATVTQGTCGFCTLEGNCLFQRF 482
SSI + I + T R ++I ++ L ++LTS S + T L G LF
Sbjct: 326 SSISFAALTLFGLIPEFTNRRMDIALVGLAINLTSGSLIAFAKPT--HAQLAGYWLF--- 380
Query: 483 LRLTPSQYILIWETVTDDMRRRIKK 557
++P YI I ++ + KK
Sbjct: 381 -GISPIPYICILSCISSNSAGHTKK 404
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,452,725
Number of Sequences: 5004
Number of extensions: 76634
Number of successful extensions: 237
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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