Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_N23
         (850 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U93847-1|AAB58269.1|  760|Caenorhabditis elegans elongation fact...    29   5.5  
U93846-1|AAB58268.1|  768|Caenorhabditis elegans elongation fact...    29   5.5  
U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein ...    29   5.5  
U10414-7|AAN63383.1|  768|Caenorhabditis elegans Elongation fact...    29   5.5  
U10414-6|AAN63384.1|  760|Caenorhabditis elegans Elongation fact...    29   5.5  
AF016661-2|AAB66051.1|  246|Caenorhabditis elegans Hypothetical ...    28   7.3  

>U93847-1|AAB58269.1|  760|Caenorhabditis elegans elongation
           factor-2 kinase EFK-1B isoform protein.
          Length = 760

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 335 HCEHTFGLDRAARRRFSKEESDGLRYLAHEEHCHLDTAIAVPGQL 201
           H EH   +D+  +R+   + S  L   +H E C     I V  QL
Sbjct: 353 HVEHGISMDQLRKRKTLNQSSTDLSAKSHNEDCVCPECIPVVEQL 397


>U93846-1|AAB58268.1|  768|Caenorhabditis elegans elongation
           factor-2 kinase EFK-1A isoform protein.
          Length = 768

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 335 HCEHTFGLDRAARRRFSKEESDGLRYLAHEEHCHLDTAIAVPGQL 201
           H EH   +D+  +R+   + S  L   +H E C     I V  QL
Sbjct: 353 HVEHGISMDQLRKRKTLNQSSTDLSAKSHNEDCVCPECIPVVEQL 397


>U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein
           ligase protein 1,isoform a protein.
          Length = 1051

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
 Frame = +2

Query: 239 NVPRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTVDIGLDQPIES 418
           N+  +PS   HP  PS    +     RR  RS  +PE+ E+  E S  T++ G ++    
Sbjct: 91  NLDMSPSRR-HPGRPSSSATISNSARRRRYRSCNSPEHLES--ESSQLTLESGSEEFRSL 147

Query: 419 HRNTRDLR---FLYPRGKLP---VPTLPPFNPKPIYI 511
            R  R L    F  P   +    +P    FN  P YI
Sbjct: 148 PRYIRQLNQRDFGSPSNSITNGYIPDSVDFNSLPRYI 184


>U10414-7|AAN63383.1|  768|Caenorhabditis elegans Elongation factor
           kinase protein1, isoform a protein.
          Length = 768

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 335 HCEHTFGLDRAARRRFSKEESDGLRYLAHEEHCHLDTAIAVPGQL 201
           H EH   +D+  +R+   + S  L   +H E C     I V  QL
Sbjct: 353 HVEHGISMDQLRKRKTLNQSSTDLSAKSHNEDCVCPECIPVVEQL 397


>U10414-6|AAN63384.1|  760|Caenorhabditis elegans Elongation factor
           kinase protein1, isoform b protein.
          Length = 760

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 335 HCEHTFGLDRAARRRFSKEESDGLRYLAHEEHCHLDTAIAVPGQL 201
           H EH   +D+  +R+   + S  L   +H E C     I V  QL
Sbjct: 353 HVEHGISMDQLRKRKTLNQSSTDLSAKSHNEDCVCPECIPVVEQL 397


>AF016661-2|AAB66051.1|  246|Caenorhabditis elegans Hypothetical
           protein F02E11.3 protein.
          Length = 246

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +2

Query: 518 GNRYRRHASEDQEELRQYNEH--FLIPRDIFQE 610
           G  YR H   D EEL + +EH  +L   DI+ E
Sbjct: 29  GTTYRSHRHADYEELSELSEHDVYLDDSDIYAE 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,211,436
Number of Sequences: 27780
Number of extensions: 436228
Number of successful extensions: 1309
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)