Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_N23
         (850 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              29   0.071
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              29   0.071
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    27   0.29 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   2.7  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   3.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   3.6  

>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 28.7 bits (61), Expect = 0.071
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +2

Query: 548 DQEELRQYNEHFLIPRDIFQE*GKFQKQKISECTPIFIES*LLK 679
           + E+ ++YNE  L   +I  E G F++  + E T I+++  ++K
Sbjct: 55  EDEKPQRYNECILKQFNIVDESGNFKENIVQELTSIYLDENVIK 98


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 28.7 bits (61), Expect = 0.071
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +2

Query: 548 DQEELRQYNEHFLIPRDIFQE*GKFQKQKISECTPIFIES*LLK 679
           + E+ ++YNE  L   +I  E G F++  + E T I+++  ++K
Sbjct: 55  EDEKPQRYNECILKQFNIVDESGNFKENIVQELTSIYLDENVIK 98


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = -2

Query: 786 IIMVNNTYEYLHYLN*NGHF----KILCIFMQNY*KYHLNLSNYDSMNIGVHSEIFCFWN 619
           I  ++N Y+Y +Y N N ++         +  NY K + N++  + + + V   I+C  N
Sbjct: 315 ISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNINYIEQIPVPVPVPIYC-GN 373

Query: 618 FP 613
           FP
Sbjct: 374 FP 375


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 702 NY*KYHLNLSNYDSMNIGVHSEIFCFWNFP 613
           NY K + N+ N + + + V   I+C  NFP
Sbjct: 348 NYKKLYYNIINIEQIPVPVPVPIYC-GNFP 376


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 256 KYRRPSDSSFENRRRAARSK 315
           KYR  S   F +RR   RSK
Sbjct: 291 KYRETSKERFRDRRERERSK 310


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +1

Query: 238 QCSSCAKYRRPSDSSFENRRRAARSKPKVCSQCHQS 345
           QC  C+K     ++   +RR   + +P  C  C ++
Sbjct: 121 QCEYCSKSFSVKENLSVHRRIHTKERPYKCDVCERA 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,604
Number of Sequences: 438
Number of extensions: 6083
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)