Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_N22
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    27   2.7  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    27   2.7  
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc...    26   6.1  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    26   6.1  
SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ...    26   8.1  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   8.1  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    26   8.1  

>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = +1

Query: 601 LVLKKETFILLIRKSSLYRERNR*SPIVGDVVVFSLSTDPRQYSLTTHIGPRRMLPHAXS 780
           LVL  E  + L R   ++  R    P+V  ++ F L T  RQ  LTT +  R +L +  S
Sbjct: 809 LVLPFEHVLSLFRFIDIWASRKWSIPLVSRIIFFLLRTYHRQ--LTTTVKMRPLLNNIRS 866

Query: 781 S 783
           S
Sbjct: 867 S 867


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 185  SITIEYNNLFNRKNQEKMESSWVGS-DHNDRKHDKNFTV 298
            S  I YN+ F +K++EK+ + W  S    D  H   FT+
Sbjct: 1392 SFLISYNDSFIKKHEEKVLTVWFESLGALDEDHAAQFTI 1430


>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 20/73 (27%), Positives = 37/73 (50%)
 Frame = +2

Query: 74  ADALVFIMVHLTEEQKKFYEENGYIVLKNVLSEEDLCSITIEYNNLFNRKNQEKMESSWV 253
           A+ L  +M+ L ++ K    E  + V K  ++  +     IE      R+N+ K+  S++
Sbjct: 249 AENLKLMMILLRDKSKNIQFE-AFHVFKLFVANPEKSEEVIE----ILRRNKSKL-ISYL 302

Query: 254 GSDHNDRKHDKNF 292
            + H DRK+D+ F
Sbjct: 303 SAFHTDRKNDEQF 315


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 215 NRKNQEKMESSWVGSDHNDRKHDKNFTVKGIHNLQFHH 328
           +  N +K   S   + HN+ + DK+   +G H+   HH
Sbjct: 269 SNSNLKKSSESGSTNHHNNHESDKDLHHEGHHHHHHHH 306


>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 343

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +2

Query: 155 KNVLSEEDLCSITIEYNNLFNRKNQEKMESSWVGSDH-NDRKHDKNFTVKGIHNLQFHHA 331
           +N    E+ CS+  EY++ F++ +Q+ ++      DH N+++ + N   K     QFH+ 
Sbjct: 255 ENAGDVENACSLVKEYSDFFDQNSQKSLD------DHFNEKEVELN---KLAFLQQFHYG 305

Query: 332 VFSKFI 349
           +   F+
Sbjct: 306 IVYAFL 311


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 355 RQSSGRSRGCNEH*EHYFPSHESSLQAPRKRSSLPNAPRLSLF 483
           +   G+SR C +  E  +P H SS  + +KR S  +     LF
Sbjct: 13  KDHGGKSRICLDSSEDTYPPHSSSPPSFQKRLSFSDFSTTRLF 55


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 428 YKPPEKGAA-YPMHQDYHYFPYEKDS 502
           Y P E  +A YP H+ Y Y+ Y + S
Sbjct: 259 YMPDESPSANYPYHEAYEYYYYIRSS 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,652,935
Number of Sequences: 5004
Number of extensions: 78231
Number of successful extensions: 194
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)