Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_N22
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    36   6e-04
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    32   0.006
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   6.5  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   8.5  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 35.5 bits (78), Expect = 6e-04
 Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
 Frame = +2

Query: 215 NRKNQEKMESSWVGSDHNDRKHDKN-FTVKGIHNLQF--HHAVFSKFIFNDNLLDALEDV 385
           N KNQ    + WV  + ND K   N     G+  L     H      +  +N     E  
Sbjct: 61  NLKNQIMTTNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVT 120

Query: 386 MNTKNIIFHHTKAHYKPPEKGAAYPMHQDYHYFPYEKDSMVASF 517
           + TK I+ H  K  +KPP    ++    D  YFP+++ +    F
Sbjct: 121 IMTKAILHHTGKVVWKPPAIYKSF-CEIDVEYFPFDEQTCFMKF 163


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 32.3 bits (70), Expect = 0.006
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
 Frame = +2

Query: 215 NRKNQEKMESSWVGS---DHNDRKHDKNFT-VKGIHNLQFHHAVFSKFIFNDNLLDALED 382
           N KNQ    + WV     D+  R   K +  VK +H +   H      +  +N     E 
Sbjct: 69  NLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVKMLH-VPSDHIWRPDIVLYNNADGNFEV 127

Query: 383 VMNTKNIIFHHTKAHYKPPEKGAAYPMHQDYHYFPYEKDSMVASF 517
            + TK  I+H     +KPP    +     D  YFP+++ + V  F
Sbjct: 128 TLATKATIYHQGLVEWKPPAIYKS-SCEIDVEYFPFDEQTCVLKF 171


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +2

Query: 353 NDNLLDALEDVMNTKNIIFHHTKA 424
           N+ + +   ++ N K+++FHH  A
Sbjct: 102 NNAVEEKRPELTNRKSVVFHHDNA 125


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +2

Query: 353 NDNLLDALEDVMNTKNIIFHHTKA 424
           N+ + +   ++ N K ++FHH  A
Sbjct: 224 NNAVEEKRPELTNRKGVVFHHDNA 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,758
Number of Sequences: 438
Number of extensions: 5466
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)