Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_N19
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.015
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.7 bits (76), Expect = 0.015
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +3

Query: 705 PXXGGXPXPPPXKKXXXGGXPPPPP 779
           P  GG P PPP       G PPPPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +3

Query: 705 PXXGGXPXPPPXKKXXXGGXPPPPP 779
           P     P P P      GG PPPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPP 766



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +1

Query: 706 PXXGGXPXPPPKKKXXXGGXPPPP 777
           P  GG P PPP      G  PPPP
Sbjct: 756 PIMGGPPPPPPPP-GVAGAGPPPP 778



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +2

Query: 704 PPXGGXXXPPPXKKXPXXGGAPPPP 778
           PP      PPP    P   GA PPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +3

Query: 705 PXXGGXPXPPPXKKXXXGGXPPPPPXXXG 791
           P     P PPP         PPPPP   G
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAG 772


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 702 PPXXGGXPXPPPXKKXXXGGXPPPPP 779
           PP     P PPP  +      PPPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +3

Query: 702 PPXXGGXPXPPPXKKXXXGGXPPPP 776
           PP     P PPP +     G  PPP
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPP 378



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +1

Query: 703 PPXXGGXPXPPPKKKXXXGGXPPPP 777
           PP     P PPP +     G  PPP
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPP 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,827
Number of Sequences: 5004
Number of extensions: 42814
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)