Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_N19
(791 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 37 0.018
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 36 0.031
At4g03120.1 68417.m00425 proline-rich family protein similar to ... 33 0.22
At1g61080.1 68414.m06877 proline-rich family protein 33 0.22
At3g15000.1 68416.m01897 expressed protein similar to DAG protei... 32 0.50
At2g18470.1 68415.m02151 protein kinase family protein contains ... 31 1.2
At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid t... 30 1.5
At1g24150.1 68414.m03047 formin homology 2 domain-containing pro... 30 2.0
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro... 29 2.7
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro... 29 2.7
At5g07770.1 68418.m00889 formin homology 2 domain-containing pro... 29 3.5
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex... 29 3.5
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 29 4.7
At4g19200.1 68417.m02833 proline-rich family protein contains pr... 28 6.2
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si... 28 6.2
At1g70140.1 68414.m08071 formin homology 2 domain-containing pro... 28 8.2
At1g54215.1 68414.m06180 proline-rich family protein contains pr... 28 8.2
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 36.7 bits (81), Expect = 0.018
Identities = 19/37 (51%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +3
Query: 687 GGGXXP--PXXGGXPXPPPXKKXXXGGXPPPPPXXXG 791
GGG P P GG P PPP GG PPPPP G
Sbjct: 676 GGGPPPPPPPPGGGPPPPP------GGGPPPPPPPPG 706
Score = 35.5 bits (78), Expect = 0.041
Identities = 15/26 (57%), Positives = 15/26 (57%)
Frame = +3
Query: 702 PPXXGGXPXPPPXKKXXXGGXPPPPP 779
PP GG P PPP GG PPPPP
Sbjct: 672 PPLPGGGPPPPP---PPPGGGPPPPP 694
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -3
Query: 735 GGGXXXPPXGGXXPPPP 685
GGG PP GG PPPP
Sbjct: 687 GGGPPPPPGGGPPPPPP 703
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +1
Query: 688 GGGXXPPXXGGXPXPPP 738
GGG PP GG P PPP
Sbjct: 687 GGGPPPPPGGGPPPPPP 703
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -1
Query: 773 GGGXPPXXXFFXGGGXGXPPXXGGXXPPP 687
GGG PP GG PP GG PPP
Sbjct: 676 GGGPPPPPP--PPGGGPPPPPGGGPPPPP 702
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 35.9 bits (79), Expect = 0.031
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +3
Query: 702 PPXXGGXPXPPPXKKXXXGGXPPPPPXXXG 791
PP P PPP KK PPPPP G
Sbjct: 389 PPSAAAPPPPPPPKKGPAAPPPPPPPGKKG 418
Score = 33.1 bits (72), Expect = 0.22
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 702 PPXXGGXPXPPPXKKXXXGGXPPPPP 779
PP P PPP K PPPPP
Sbjct: 388 PPPSAAAPPPPPPPKKGPAAPPPPPP 413
Score = 31.5 bits (68), Expect = 0.66
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 702 PPXXGGXPXPPPXKKXXXGGXPPPPP 779
PP G PPP G PPPPP
Sbjct: 400 PPKKGPAAPPPPPPPGKKGAGPPPPP 425
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Frame = +3
Query: 702 PPXXGG--XPXPPPXKKXXXGGXPPPPP 779
PP G P PPP G PPPPP
Sbjct: 399 PPPKKGPAAPPPPPPPGKKGAGPPPPPP 426
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = +3
Query: 702 PPXXGGXPXPPPXKKXXXGGXPPPPPXXXG 791
PP PPP PPPPP G
Sbjct: 375 PPGPANQTSPPPPPPPSAAAPPPPPPPKKG 404
>At4g03120.1 68417.m00425 proline-rich family protein similar to U1
small nuclear ribonucleoprotein C; contains proline rich
extensin domains, INTERPRO:IPR002965
Length = 207
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -2
Query: 775 GGGGXPPXXXFFXGGGXGXPPXXGGXXPPP 686
G GG PP G G G PP G PPP
Sbjct: 145 GQGGGPPGMAPIPGQGGGPPPNYNGLPPPP 174
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 33.1 bits (72), Expect = 0.22
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +3
Query: 714 GGXPXPPPXKKXXXGGXPPPPP 779
GG P PPP G PPPPP
Sbjct: 588 GGPPPPPPPMPLANGATPPPPP 609
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 704 PPXGGXXXPPPXKKXPXXGGAPPPP 778
PP G PPP P APPPP
Sbjct: 541 PPPGTAAAPPPPPPPPGTQAAPPPP 565
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 702 PPXXGGXPXPPPXKKXXXGGXPPPPP 779
PP P PPP PPPPP
Sbjct: 542 PPGTAAAPPPPPPPPGTQAAPPPPPP 567
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Frame = +3
Query: 702 PPXXGGXPXPPPXKKXXXG-GXPPPPP 779
PP P PPP G G PPPPP
Sbjct: 568 PPMQNRAPSPPPMPMGNSGSGGPPPPP 594
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 702 PPXXGGXPXPPPXKKXXXGGXPPPPP 779
PP P PPP PPPPP
Sbjct: 529 PPRAAVAPPPPPPPPGTAAAPPPPPP 554
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 704 PPXGGXXXPPPXKKXPXXGGAPPPP 778
PP PPP P APPPP
Sbjct: 528 PPPRAAVAPPPPPPPPGTAAAPPPP 552
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = +3
Query: 702 PPXXGGXPXPPPXKKXXXGGXPPPPPXXXG 791
PP PPP PPPPP G
Sbjct: 528 PPPRAAVAPPPPPPPPGTAAAPPPPPPPPG 557
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/26 (38%), Positives = 11/26 (42%)
Frame = +3
Query: 702 PPXXGGXPXPPPXKKXXXGGXPPPPP 779
P P PPP + PPPPP
Sbjct: 517 PTTIAAPPPPPPPPRAAVAPPPPPPP 542
>At3g15000.1 68416.m01897 expressed protein similar to DAG protein
(required for chloroplast differentiation and palisade
development) GB:Q38732 [Antirrhinum majus]
Length = 395
Score = 31.9 bits (69), Expect = 0.50
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = +3
Query: 687 GGGXXPPXXGGXPXPPPXKKXXXGGXPPPPP 779
GG PP GG PPP GG PPPP
Sbjct: 249 GGPPPPPHIGGSAPPPP----HMGGSAPPPP 275
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +3
Query: 687 GGGXXPPXXGGXPXPPPXKKXXXGGXPPPPPXXXG 791
G PP GG PPP G PPPP G
Sbjct: 259 GSAPPPPHMGGSAPPPPHMGQNYG--PPPPNNMGG 291
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/36 (44%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Frame = +3
Query: 690 GGXXP--PXXGGXPXPPPXKKXXXGGXPPPPPXXXG 791
GG P P GG P PP GG PPPP G
Sbjct: 239 GGPPPQRPPMGGPPPPP-----HIGGSAPPPPHMGG 269
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -1
Query: 770 GGXPPXXXFFXGGGXGXPPXXGGXXPPP 687
GG PP GG PP GG PPP
Sbjct: 249 GGPPPPPHI--GGSAPPPPHMGGSAPPP 274
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +3
Query: 687 GGGXXPPXXGGXPXPPPXKKXXXGGXPPP 773
GG PP G PPP G PPP
Sbjct: 258 GGSAPPPPHMGGSAPPPPHMGQNYGPPPP 286
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +1
Query: 688 GGGXXPPXXGGXPXPPPKKKXXXGGXPPP 774
GG PP G PPP G PPP
Sbjct: 258 GGSAPPPPHMGGSAPPPPHMGQNYGPPPP 286
>At2g18470.1 68415.m02151 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 633
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +3
Query: 687 GGGXXPPXXGGXPXPPPXKKXXXGGXPPPPPXXXG 791
GG PP G P PP GG PP G
Sbjct: 90 GGNDTPPSRGSPPSPPSRSNGDNGGSRSSPPGDTG 124
>At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to auxin
down regulated GB:X69640 GI:296442 from [Glycine max];
contains Pfam profile PF00234: Protease inhibitor/seed
storage/LTP family
Length = 297
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +2
Query: 689 GGGXXPPXGGXXXPPPXKKXPXXGGAPPPP 778
GGG PP GG PP GG PP
Sbjct: 61 GGGKPPPHGGKGGGPPHHGGGGGGGGKSPP 90
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = -2
Query: 790 PXXXGGGGGXPPXXXFFXGGGXGXPPXXGGXXPPP 686
P GGGGG G G G PP GG P
Sbjct: 41 PQHGGGGGGGSKPPPHHGGKGGGKPPPHGGKGGGP 75
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -2
Query: 778 GGGGGXPPXXXFFXGGGXGXPPXXGGXXPP 689
GGGG PP GGG P G PP
Sbjct: 47 GGGGSKPPPHHGGKGGGKPPPHGGKGGGPP 76
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = -2
Query: 790 PXXXGGGGGXPPXXXFFXGGGXGXPPXXGGXXPPP 686
P GG GG PP GGG PP PPP
Sbjct: 65 PPPHGGKGGGPPHHGGGGGGGGKSPPV---VRPPP 96
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -2
Query: 778 GGGGGXPPXXXFFXGGGXGXPPXXGGXXPPP 686
GGGGG P GG PP G PP
Sbjct: 46 GGGGGSKPPPHHGGKGGGKPPPHGGKGGGPP 76
>At1g24150.1 68414.m03047 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 725
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 723 PXPPPXKKXXXGGXPPPPP 779
P PPP K G PPPPP
Sbjct: 260 PPPPPPKLKNNGPSPPPPP 278
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 702 PPXXGGXPXPPPXKKXXXGGXPPPPP 779
P P PPP K G PPPP
Sbjct: 252 PVKQSATPPPPPPPKLKNNGPSPPPP 277
>At5g54650.2 68418.m06805 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 705 PXXGGXPXPPPXKKXXXGGXPPPPP 779
P G P PPP G P PPP
Sbjct: 380 PSSAGPPRPPPPAPPPGSGGPKPPP 404
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 702 PPXXGGXPXPPPXKKXXXGGXPPPP 776
PP G P PPP G PPPP
Sbjct: 393 PPPGSGGPKPPP-PPGPKGPRPPPP 416
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +1
Query: 703 PPXXGGXPXPPPKKKXXXGGXPPPP 777
PP G P PPP G PPPP
Sbjct: 393 PPPGSGGPKPPPPP-GPKGPRPPPP 416
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 702 PPXXGGX-PXPPPXKKXXXGGXPPPPPXXXG 791
PP GG P PPP K G PPPP G
Sbjct: 394 PPGSGGPKPPPPPGPK----GPRPPPPMSLG 420
>At5g54650.1 68418.m06804 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 705 PXXGGXPXPPPXKKXXXGGXPPPPP 779
P G P PPP G P PPP
Sbjct: 380 PSSAGPPRPPPPAPPPGSGGPKPPP 404
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 702 PPXXGGXPXPPPXKKXXXGGXPPPP 776
PP G P PPP G PPPP
Sbjct: 393 PPPGSGGPKPPP-PPGPKGPRPPPP 416
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +1
Query: 703 PPXXGGXPXPPPKKKXXXGGXPPPP 777
PP G P PPP G PPPP
Sbjct: 393 PPPGSGGPKPPPPP-GPKGPRPPPP 416
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 702 PPXXGGX-PXPPPXKKXXXGGXPPPPPXXXG 791
PP GG P PPP K G PPPP G
Sbjct: 394 PPGSGGPKPPPPPGPK----GPRPPPPMSLG 420
>At5g07770.1 68418.m00889 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 722
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3
Query: 717 GXPXPPPXKKXXXGGXPPPPP 779
G P PPP GG PPPPP
Sbjct: 636 GSPSPPPPS--MSGGAPPPPP 654
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 702 PPXXGGXPXPPPXKKXXXGGXPPPPP 779
PP G P PPP P PPP
Sbjct: 15 PPMRGRVPLPPPPPPPMRRSAPSPPP 40
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 729 PPPXKKXXXGGXPPPPP 779
PPP GG PPPPP
Sbjct: 698 PPPTLPSMSGGAPPPPP 714
>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycsimilar to extensin-like protein [Lycopersicon
esculentum] gi|5917664|gb|AAD55979; contains
leucine-rich repeats, Pfam:PF00560; contains proline
rich extensin domains, INTERPRO:IPR002965
Length = 470
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +3
Query: 693 GXXPPXXGGXPXPPPXKKXXXGGXPPPPP 779
G PP P PPP PPPPP
Sbjct: 373 GCSPPSPPPPPPPPPPPPPPPPPPPPPPP 401
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 702 PPXXGGXPXPPPXKKXXXGGXPPPPP 779
PP P PPP PPPPP
Sbjct: 393 PPPPPPPPPPPPPPPYVYPSPPPPPP 418
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 702 PPXXGGXPXPPPXKKXXXGGXPPPPP 779
PP P PPP PPPPP
Sbjct: 432 PPPVYSPPPPPPPPPPVYSPPPPPPP 457
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 702 PPXXGGXPXPPPXKKXXXGGXPPPPP 779
PP P PPP PPPPP
Sbjct: 446 PPVYSPPPPPPPPPPPPVYSPPPPPP 471
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 702 PPXXGGXPXPPPXKKXXXGGXPPPPP 779
PP P PPP PPPPP
Sbjct: 433 PPVYSPPPPPPPPPPVYSPPPPPPPP 458
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 702 PPXXGGXPXPPPXKKXXXGGXPPPPP 779
PP P PPP PPPPP
Sbjct: 467 PPPPPPPPPPPPVYSPPPPSPPPPPP 492
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 702 PPXXGGXPXPPPXKKXXXGGXPPPPP 779
PP P PPP PPPPP
Sbjct: 482 PPPPSPPPPPPPVYSPPPPPPPPPPP 507
>At4g19200.1 68417.m02833 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 179
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Frame = +3
Query: 687 GGGXXPPXXGGXP---XPPPXKKXXXGGXPP 770
GGG PP GG P PP GG PP
Sbjct: 21 GGGHYPPAQGGYPPQGYPPQQGYPPAGGYPP 51
>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
similar to chloroplast membrane protein (ALBINO3)
(GI:3927828) [Arabidopsis thaliana]
Length = 1013
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -1
Query: 776 GGGGXPPXXXFFXGGGXGXPPXXGGXXPPP 687
GG G PP GGG G PP GG P
Sbjct: 410 GGSGSPPST----GGGSGSPPSTGGGGGSP 435
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -2
Query: 790 PXXXGGGGGXPPXXXFFXGGGXGXPPXXGG 701
P GGG G PP GGG G P GG
Sbjct: 415 PPSTGGGSGSPPS----TGGGGGSPSKGGG 440
>At1g70140.1 68414.m08071 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 760
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 729 PPPXKKXXXGGXPPPPP 779
PPP KK PPPPP
Sbjct: 257 PPPIKKGSSPSPPPPPP 273
>At1g54215.1 68414.m06180 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 169
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 702 PPXXGGXPXPPPXKKXXXGGXPPPPP 779
PP P PP G PPPPP
Sbjct: 54 PPPPPPPPPPPAVNMSVETGIPPPPP 79
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,966,578
Number of Sequences: 28952
Number of extensions: 292860
Number of successful extensions: 2502
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1502
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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