Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_N17
(888 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot... 130 3e-31
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote... 128 8e-31
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 0.90
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 1.5
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual 28 2.0
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb... 27 4.7
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 26 6.2
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 26 8.2
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 26 8.2
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 26 8.2
>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 130 bits (314), Expect = 3e-31
Identities = 56/91 (61%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Frame = +2
Query: 89 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--K 262
M KRTKKVG+TGKYG RYGASLR+ V+K+EV QH++Y C FCG++ +KR+ GIW C K
Sbjct: 1 MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGK 60
Query: 263 RCKRTVAGGAWVFSTTAASSCRSAVRRLREV 355
CK+ +AGGAW +T AA+S RS +RRLRE+
Sbjct: 61 GCKKVLAGGAWTVTTAAATSARSTIRRLREM 91
>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 128 bits (310), Expect = 8e-31
Identities = 56/91 (61%), Positives = 71/91 (78%), Gaps = 2/91 (2%)
Frame = +2
Query: 89 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--K 262
M KRTKKVG+TGKYG RYGASLR+ V+K+EV QH++Y C FCG+ +KR+ GIW C K
Sbjct: 1 MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGK 60
Query: 263 RCKRTVAGGAWVFSTTAASSCRSAVRRLREV 355
C +T+AGGAW +T AA+S RS +RRLRE+
Sbjct: 61 GCSKTLAGGAWTVTTAAATSARSTIRRLREM 91
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.0 bits (52), Expect(2) = 0.90
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +2
Query: 698 GFFPP*XXPPPPP 736
GF PP PPPPP
Sbjct: 17 GFEPPSQPPPPPP 29
Score = 22.2 bits (45), Expect(2) = 0.90
Identities = 9/25 (36%), Positives = 10/25 (40%)
Frame = +2
Query: 587 LGXLXPXXEPLXPPKXXFTXPXXPP 661
+ L P P PP F P PP
Sbjct: 1 MASLPPGNPPPPPPPPGFEPPSQPP 25
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.3 bits (60), Expect = 1.5
Identities = 19/60 (31%), Positives = 22/60 (36%)
Frame = +3
Query: 603 LXXNPXXPPKXXLXPPXXLXFIXHVPXGRVXKGFSPXKXXPPPPPGXXXXXPFLXXPFPP 782
L +P PP + P I P + G P PPPPPG P P PP
Sbjct: 728 LLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPP----PPPPPGVAGAGPPPPPPPPP 783
>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 282 ATVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTS 175
+T +L ++ Q+ T F+A + +NE +FA W TS
Sbjct: 69 STSVLRQVGWQLSTS--FVAHVSENENTFFAIWYTS 102
>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 457
Score = 26.6 bits (56), Expect = 4.7
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Frame = +3
Query: 27 GILKICFSFLCQLLYRRGL-------PKWPNVPKRL-ELLANMAHVTVPLYVKWSKR 173
GIL+ CFSFL + GL PK + RL ELL + H+T L +W+ R
Sbjct: 243 GILEECFSFLEDAKTKEGLSDEMKSSPKLQQIYHRLDELLNKLKHLT--LTHRWTLR 297
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 185 QHAKYT-CSFCGKDAMKRSCVGIWSCKRCKR 274
+H K T C C + +K C +W C+ CK+
Sbjct: 15 RHRKITSCRECHR--LKLKCDRVWPCENCKK 43
>SPBC29A3.05 |||chromatin remodeling complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +2
Query: 194 KYTCSFCGKDAMKRSCVGIWSCKRCKRTVA 283
KY C CG + C I S RC + A
Sbjct: 110 KYACQNCGTSYCSKGCEVIHSETRCMKVYA 139
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 172 LFDHFT*RGTVTCAIFASNSNLFGT 98
+FD FT +T I ASN N FG+
Sbjct: 550 VFDEFTNISNLTSPIEASNGNTFGS 574
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.8 bits (54), Expect = 8.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -2
Query: 137 VCHICQ*FQPFWYVWPF 87
+ ++ Q FQ WY WPF
Sbjct: 1251 IVYLVQDFQRLWYHWPF 1267
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,608,614
Number of Sequences: 5004
Number of extensions: 45127
Number of successful extensions: 144
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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