Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_N17
         (888 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-2|CAB54440.1|   91|Caenorhabditis elegans Hypothetical ...   146   1e-35
Z66524-1|CAA91420.2|  500|Caenorhabditis elegans Hypothetical pr...    33   0.36 
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    30   2.5  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   5.9  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   5.9  
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AL110490-2|CAB54440.1|   91|Caenorhabditis elegans Hypothetical
           protein Y48B6A.2 protein.
          Length = 91

 Score =  146 bits (355), Expect = 1e-35
 Identities = 62/90 (68%), Positives = 76/90 (84%)
 Frame = +2

Query: 89  MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 268
           MAKRTKKVGI GKYGTRYGASLRKM KK+EV QH++YTCSFCGK+AMKR   GIW+C +C
Sbjct: 1   MAKRTKKVGIVGKYGTRYGASLRKMAKKLEVAQHSRYTCSFCGKEAMKRKATGIWNCAKC 60

Query: 269 KRTVAGGAWVFSTTAASSCRSAVRRLREVK 358
            + VAGGA+V+ T  A++ RS +RRLR++K
Sbjct: 61  HKVVAGGAYVYGTVTAATVRSTIRRLRDLK 90


>Z66524-1|CAA91420.2|  500|Caenorhabditis elegans Hypothetical
           protein T13H5.4 protein.
          Length = 500

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +1

Query: 52  FSVNFCIGEVYQNGQTYQKGWNYWQIWHTLRCLST*NGQKDGSNPTRKVYLLILW 216
           +S   C  + Y+  + +QK +N W+  H +RCL   N     +N T+    L LW
Sbjct: 405 YSCEICGNQTYKGPKAFQKHFNEWRHSHGMRCLGIPN-TSHFANITKIKDALDLW 458


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = +2

Query: 602 PXXEPLXPPKXXFTXPXXPPFYXPRSXGEGXKGFFPP*XXPPPPP 736
           P   P+ PP      P  PP   PR+         PP   PPPPP
Sbjct: 157 PRRPPMTPPSPQRRPPRTPPSPEPRNPPR-----TPPSPIPPPPP 196


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 18/56 (32%), Positives = 19/56 (33%)
 Frame = +3

Query: 615 PXXPPKXXLXPPXXLXFIXHVPXGRVXKGFSPXKXXPPPPPGXXXXXPFLXXPFPP 782
           P  PP     PP         P G    G  P    PPPPP      P +  P PP
Sbjct: 317 PPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMP----PPPPPRYPSAGPGMYPPPPP 368


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 18/56 (32%), Positives = 19/56 (33%)
 Frame = +3

Query: 615 PXXPPKXXLXPPXXLXFIXHVPXGRVXKGFSPXKXXPPPPPGXXXXXPFLXXPFPP 782
           P  PP     PP         P G    G  P    PPPPP      P +  P PP
Sbjct: 327 PPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMP----PPPPPRYPSAGPGMYPPPPP 378


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 185 QHAKYTCSFCGKDAMKRSCVGIWSCKRC 268
           ++ KY C+ C      R   G+WSCK C
Sbjct: 229 ENNKYECAICYTRITTRQ--GVWSCKTC 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,458,180
Number of Sequences: 27780
Number of extensions: 310993
Number of successful extensions: 1142
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)