Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_N13
         (956 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    27   0.19 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.44 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.1  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 27.5 bits (58), Expect = 0.19
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -3

Query: 438 GGXXGGGXGXGAXGGGXXAGXGXGGGG 358
           G    GG   GA GG    G   GGGG
Sbjct: 23  GSSSAGGVVTGASGGSIVVGANNGGGG 49



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -3

Query: 435 GXXGGGXGXGAXGGGXXAGXGXGGG 361
           G  GG    GA  GG   G G   G
Sbjct: 33  GASGGSIVVGANNGGGGGGLGIASG 57


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 0.44
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +2

Query: 368 PXPXPAXXPPPXAPXPXPPPXXPPXXXXXGXXXGXPGLPPNR 493
           P P P+    P AP    PP  P      G   G PG PP++
Sbjct: 21  PGPQPSPHQSPQAPQRGSPP-NPSQGPPPG---GPPGAPPSQ 58



 Score = 25.4 bits (53), Expect = 0.77
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 374 PXPAXXPPPXAPXPXPPPXXP 436
           P P+  PPP  P   PP   P
Sbjct: 40  PNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.0 bits (47), Expect = 4.1
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = +2

Query: 392 PPPXAPXPXPPPXXPPXXXXXGXXXGXPGLPPNRGIP 502
           P   AP P P P   P     G        PP  G P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 11/30 (36%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
 Frame = +2

Query: 362 PPPXPXPAXXPP----PXAPXPXPPPXXPP 439
           P P P  +   P    P  P   PPP  PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 21.8 bits (44), Expect = 9.4
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +2

Query: 359 PPPPXPXPAXXPPPXAPXPXPP 424
           PP P   P    PP AP    P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 245 PXPXPPXPPPPXXXP 289
           P P PP PPP    P
Sbjct: 339 PKPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 4.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 252 PPXPXPPPP 278
           PP P PPPP
Sbjct: 338 PPKPAPPPP 346



 Score = 22.2 bits (45), Expect = 7.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 405 PPXXPPPPXPP 437
           PP   PPP PP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 7.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 408 PXXPPPPXPPP 440
           P  P PP PPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 21.8 bits (44), Expect = 9.4
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 392 PPPXAPXPXPPPXXPP 439
           PP  AP P PP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 417  PPPPXPPP 440
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.159    0.615 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,510
Number of Sequences: 438
Number of extensions: 6074
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31444140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)