Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_N10
         (929 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    29   0.93 
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po...    28   2.2  

>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -3

Query: 234 PSDKVVNIARVSD*P*KLAGDRILLCVTRRHRNLSVHAXQGVQRDNNXLGIH 79
           P+DKVV +   +  P K A   +L C  R+ R+LSV   + ++RD+     H
Sbjct: 70  PADKVVEVVEKALGPHKSA---LLHCAIRQSRSLSVGNTRSLKRDSRGSSDH 118


>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 433

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +2

Query: 218 TTLSLGTGKWGEGRSSGLWERATXDFLVXVVTTGSSSMMTAAN*PDRLTAPEY*DL 385
           T + +G G +G   +  L +  + D ++ +      S M+AAN  +++  PEY DL
Sbjct: 4   TIVIVGCGVFGLSTAVELAKNHSFDNIIAIDAEPVPSSMSAANDINKIVRPEYADL 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,741,949
Number of Sequences: 5004
Number of extensions: 45495
Number of successful extensions: 87
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)