Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_N09
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...   130   3e-31
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...   130   3e-31
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...   128   8e-31
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   6.1  
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe...    26   6.1  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    26   8.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   8.1  

>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  130 bits (314), Expect = 3e-31
 Identities = 58/77 (75%), Positives = 64/77 (83%)
 Frame = +3

Query: 72  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 251
           M RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1   MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60

Query: 252 VLKIVKQRLIKVDGKVR 302
           V  I+ QRLIKVDGKVR
Sbjct: 61  VKAILMQRLIKVDGKVR 77



 Score =  102 bits (245), Expect = 6e-23
 Identities = 44/59 (74%), Positives = 51/59 (86%)
 Frame = +1

Query: 292 GKLGTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 468
           GK+ TD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV  G
Sbjct: 74  GKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLG 132



 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 22/29 (75%), Positives = 26/29 (89%)
 Frame = +2

Query: 479 VPYLVTHDGRTIRXPDPLIKVXXSIQLNI 565
           VP+LVTHDGRTIR PDPLIKV  +I+LN+
Sbjct: 136 VPFLVTHDGRTIRYPDPLIKVNDTIKLNL 164


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score =  130 bits (314), Expect = 3e-31
 Identities = 58/77 (75%), Positives = 64/77 (83%)
 Frame = +3

Query: 72  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 251
           M RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1   MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60

Query: 252 VLKIVKQRLIKVDGKVR 302
           V  I+ QRLIKVDGKVR
Sbjct: 61  VKAILMQRLIKVDGKVR 77



 Score =  101 bits (242), Expect = 1e-22
 Identities = 43/59 (72%), Positives = 51/59 (86%)
 Frame = +1

Query: 292 GKLGTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 468
           GK+ TD T+P GFMDV+S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV  G
Sbjct: 74  GKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLG 132



 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 22/29 (75%), Positives = 26/29 (89%)
 Frame = +2

Query: 479 VPYLVTHDGRTIRXPDPLIKVXXSIQLNI 565
           VP+LVTHDGRTIR PDPLIKV  +I+LN+
Sbjct: 136 VPFLVTHDGRTIRYPDPLIKVNDTIKLNL 164


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  128 bits (310), Expect = 8e-31
 Identities = 57/77 (74%), Positives = 64/77 (83%)
 Frame = +3

Query: 72  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 251
           M RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1   MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60

Query: 252 VLKIVKQRLIKVDGKVR 302
           V  I+ QRLI+VDGKVR
Sbjct: 61  VKAILMQRLIQVDGKVR 77



 Score =  102 bits (245), Expect = 6e-23
 Identities = 44/59 (74%), Positives = 51/59 (86%)
 Frame = +1

Query: 292 GKLGTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 468
           GK+ TD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV  G
Sbjct: 74  GKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLG 132



 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 22/29 (75%), Positives = 26/29 (89%)
 Frame = +2

Query: 479 VPYLVTHDGRTIRXPDPLIKVXXSIQLNI 565
           VP+LVTHDGRTIR PDPLIKV  +I+LN+
Sbjct: 136 VPFLVTHDGRTIRYPDPLIKVNDTIKLNL 164


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 308 SVPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQGQALAQLVGT 171
           S+P  P+        NFQ      S L  IP++   G ++A+++GT
Sbjct: 36  SIPLSPVAFELDFSGNFQFISDNSSELLDIPKDKIIGHSVAEVLGT 81


>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 325

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 371 RNSSLVFSIETTSINPAG*VGSVPNFPINLY 279
           +N  L+  IE  +INP+  + +   FP  +Y
Sbjct: 34  KNGELLVKIEAAAINPSDLMNATGGFPYTVY 64


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +1

Query: 670 PXKKXPGXPXXIXSXSXDPPGXXPXXPP 753
           P ++ P  P    S S  PP   P  PP
Sbjct: 53  PTRRLPRKPLPFRSTSLQPPSSQPPAPP 80


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/46 (34%), Positives = 17/46 (36%)
 Frame = +3

Query: 726  PRGXPPXPPXRVXTXXXSKXPXXGAPKKGVXFFPXPRAGXKGXFPP 863
            P G PP P   V        P   AP  G+   P P AG     PP
Sbjct: 1155 PSGAPPVPKPSVAA------PPVPAPSSGIPPVPKPAAGVPPVPPP 1194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,194,726
Number of Sequences: 5004
Number of extensions: 61070
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)