Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_N09
         (875 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   120   2e-27
AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical ...    29   5.8  
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p...    28   7.6  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   7.6  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  120 bits (288), Expect = 2e-27
 Identities = 55/75 (73%), Positives = 62/75 (82%)
 Frame = +3

Query: 78  RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 257
           RGPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61

Query: 258 KIVKQRLIKVDGKVR 302
           KI+ QR+++VDGKVR
Sbjct: 62  KILTQRVVRVDGKVR 76



 Score = 85.0 bits (201), Expect = 6e-17
 Identities = 49/117 (41%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
 Frame = +1

Query: 283 RLMGKLGTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 462
           R+ GK+ T   +P GFMDVV+IE+TNE FR++YD KGR+ +HRI   EA +KLCKVK V 
Sbjct: 70  RVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVR 129

Query: 463 TGT*XCSVLGNA*WPHHPLXRP-TYQSXRXHPVKHCQLXKIMDXIKFESGELVXDPG 630
           T      VL         +  P  +       V +    KI D +KFE G L    G
Sbjct: 130 TVNKGVPVLTTT--DGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTG 184


>AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical
           protein Y53H1A.1 protein.
          Length = 613

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 720 GPPRGXPPXPPXRVXTXXXSKXP 788
           GPPRG PP PP    T   +  P
Sbjct: 94  GPPRGYPPPPPQGADTWRGAPPP 116


>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
            protein T20D3.11 protein.
          Length = 1843

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = -1

Query: 161  SRCIHTAKFVQHPCFGSV*----ALQMLLRASRHVGQVLNRERQILRIPYSE 18
            S+   TAKF+Q     ++      L  L R  R+VG VL++E+Q L+  +SE
Sbjct: 902  SKVESTAKFIQKMIASALDLCSVTLNKLCREHRYVGFVLSKEKQKLKSGHSE 953


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 21/69 (30%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
 Frame = +2

Query: 659 PIXVPRKKXPGSLXXFXPXQXTPPGXXPXPPPKGXNXXXFQKXRXRGPQKGXXIFSLXPG 838
           P   PR   P S   + P    PPG  P PP            R   P  G       PG
Sbjct: 281 PGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPG 340

Query: 839 -RXKGAFPP 862
            R  G  PP
Sbjct: 341 MRYPGGMPP 349


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 21/69 (30%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
 Frame = +2

Query: 659 PIXVPRKKXPGSLXXFXPXQXTPPGXXPXPPPKGXNXXXFQKXRXRGPQKGXXIFSLXPG 838
           P   PR   P S   + P    PPG  P PP            R   P  G       PG
Sbjct: 291 PGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPG 350

Query: 839 -RXKGAFPP 862
            R  G  PP
Sbjct: 351 MRYPGGMPP 359


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,502,855
Number of Sequences: 27780
Number of extensions: 400463
Number of successful extensions: 958
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)