Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_N09
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    28   0.13 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   1.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.5  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   8.5  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -3

Query: 429 SLLRGDTVDCESALNIID*TKQFISLLN*DNIHKSSRIS 313
           SLL+ +TV C+ A++++      + +++ DNIH    IS
Sbjct: 381 SLLKENTVTCQEAMHMLKNADSQLLVISDDNIHIKGVIS 419


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 471 GSGRHTLDFTQLVLSLLRGDTVDCESALNIID 376
           G G  +   + +VL LL G TVD + +L   D
Sbjct: 8   GGGMVSAILSSIVLLLLLGRTVDAQRSLEFFD 39


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 710 PXQXTPPGXXPXPPP 754
           P Q  PPG  P  PP
Sbjct: 42  PSQGPPPGGPPGAPP 56


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 232 YFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLS 131
           Y R  +R  T  +H ++    +DG+G Y   S S
Sbjct: 83  YNRMDMRNATYYQHQQDHGSGMDGMGGYRSASPS 116


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 465 GRHTLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 352
           G+  +  T L+ ++L    + CE  +NI    K ++SL
Sbjct: 77  GQSAVGLTFLLGAILVQVAIICEGVMNIQKDNKSYLSL 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,055
Number of Sequences: 438
Number of extensions: 5126
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)