Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_N08
(862 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 32 0.51
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 30 2.7
01_05_0679 + 24230740-24230929,24231330-24231461,24231710-242319... 29 4.8
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 28 8.3
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 28 8.3
06_01_0561 - 3983308-3983564,3983652-3983775 28 8.3
03_05_0825 - 27986393-27986767,27987541-27987625,27987936-279880... 28 8.3
02_05_0686 - 30900748-30902167,30903442-30904742 28 8.3
02_04_0382 - 22501041-22501279,22501717-22501810 28 8.3
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 25 9.1
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 32.3 bits (70), Expect = 0.51
Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +3
Query: 801 PPPPPGGXGGXXFFR-PPPXP 860
PPP GG GG F+R PPP P
Sbjct: 19 PPPQAGGGGGGEFYRGPPPQP 39
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +3
Query: 801 PPPPPGGXGGXXFFRPPPXP 860
PPPPP G F PPP P
Sbjct: 548 PPPPPPPSGNKPAFSPPPPP 567
>01_05_0679 +
24230740-24230929,24231330-24231461,24231710-24231977,
24232170-24232388,24233538-24233673,24233899-24234147,
24234783-24235100
Length = 503
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +2
Query: 188 INTLAESAKKTIEELR--EKVESALAPETVKKNFGTMVDSFNEFYKNLKPAE 337
++ E A+K E L+ +K +L PE +K+ F +++ +F +F L+P E
Sbjct: 254 VHATLEEARKFNEALQRWDKNAVSLVPEGLKRFFLSIMSNFRDFEDELEPHE 305
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +3
Query: 801 PPPPPGGXGGXXFFRPPPXP 860
PPPPPG GG PPP P
Sbjct: 626 PPPPPGKPGGPP--PPPPRP 643
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +3
Query: 801 PPPPPGGXGGXXFFRPPPXP 860
PPPPPG GG PPP P
Sbjct: 931 PPPPPGKPGGPP---PPPPP 947
>06_01_0561 - 3983308-3983564,3983652-3983775
Length = 126
Score = 28.3 bits (60), Expect = 8.3
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 801 PPPPPGGXGGXXFFRPPPXP 860
PPPP GG PPP P
Sbjct: 87 PPPPTSNDGGIESISPPPPP 106
>03_05_0825 -
27986393-27986767,27987541-27987625,27987936-27988036,
27988144-27988227,27988868-27988939,27989203-27989319,
27989386-27989526,27989951-27990122,27990324-27990372,
27990773-27990821,27991240-27991270,27991301-27991371
Length = 448
Score = 28.3 bits (60), Expect = 8.3
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +2
Query: 170 PKEDNSINTLAESAKKTIEELREKVE 247
PKE ++ T+A + +KT EE+R +++
Sbjct: 91 PKESSTATTMAAATEKTAEEIRRELQ 116
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +3
Query: 801 PPPPPGGXGGXXFFRPPPXP 860
PPPPPGG G PPP P
Sbjct: 366 PPPPPGGKKGGP---PPPPP 382
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 783 SPL*XXPPPPPGGXGGXXFFRPPPXP 860
SP PPP P GG + +PPP P
Sbjct: 77 SPDYYDPPPSPYYGGGGGYGKPPPPP 102
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 25.0 bits (52), Expect(2) = 9.1
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 801 PPPPPGGXGGXXFFRPPPXP 860
PPPPP G PPP P
Sbjct: 94 PPPPPYGVNSSQPPPPPPPP 113
Score = 21.4 bits (43), Expect(2) = 9.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 777 FLSPL*XXPPPPPG 818
FL+P PPPPPG
Sbjct: 51 FLAP---PPPPPPG 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,826,722
Number of Sequences: 37544
Number of extensions: 336466
Number of successful extensions: 1028
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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