Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_N07
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    28   1.9  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    27   3.3  
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    26   5.8  

>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +2

Query: 119  AIPFTVLEIPNIKIKKPTWLQAPSAMTTFSLVLLSYFLVTGGIIY 253
            ++P +    PN+    P+    P A   F + L+  F+  GG++Y
Sbjct: 2299 SLPVSDRVFPNLGAWNPSEGPGPCASPCFYIALICQFVAVGGLLY 2343


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 110 GLFAIPFTVLEIPNIK--IKKPTWLQAPSAMTTFSLVLLSYFLVT 238
           G+ A+ F     PN +  ++K  +  +PS +T+F L L SY   T
Sbjct: 24  GVLALDFVAKTFPNQENQLEKRDYTYSPSGITSFPLDLQSYTYYT 68


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 440 PKLNRILLISVAFLCILVSFFTTWI 514
           P +  +L + ++ L ++V FFT W+
Sbjct: 81  PNIYSLLRLLISVLAVIVVFFTAWV 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,192
Number of Sequences: 5004
Number of extensions: 56459
Number of successful extensions: 121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)