Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_N05
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   0.31 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   7.9  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    26   7.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   7.9  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect(2) = 0.31
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 776 PPPPPPXXXXKKKK 817
           PPPPPP    KK+K
Sbjct: 24  PPPPPPPGYVKKRK 37



 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = +1

Query: 703 GXXPPPPGKKXPPXXXXXPLXXXXXPPPPPXXXXXKKK 816
           G  PPPP    PP     P      PPPPP     KK+
Sbjct: 7   GNPPPPP----PPPGFEPP----SQPPPPPPPGYVKKR 36



 Score = 22.6 bits (46), Expect(2) = 0.31
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 758 PSXSXXPPPPPP 793
           P  +  PPPPPP
Sbjct: 5   PPGNPPPPPPPP 16


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = +1

Query: 712  PPPPGKKXPPXXXXXPLXXXXXPPPPP 792
            PPPP    PP     P+       PPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = +1

Query: 712 PPPPGKKXPPXXXXXPLXXXXXPPPPP 792
           PPPP +         P      PPPPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPP 365


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 758  PSXSXXPPPPPPXXXXKK 811
            PS    PPPPPP    KK
Sbjct: 1091 PSAVPPPPPPPPAEVEKK 1108


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +1

Query: 712 PPPPGKKXPPXXXXXPLXXXXXPPPPP 792
           PP P    PP     P      PPPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPP 779


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,107,234
Number of Sequences: 5004
Number of extensions: 28887
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)