Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_N03
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.86 
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      26   6.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   8.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.0  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 727 PPPXPPPPXXXXPXXXPP 780
           PPP PPPP    P   PP
Sbjct: 9   PPPPPPPPGFEPPSQPPP 26


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -1

Query: 367 TRNEGPMSQYCKASMWLVWIFRTSSSQPAS 278
           T+   P   Y     WLVW     +S PAS
Sbjct: 447 TQGSAPPWHYIPCQSWLVWYPSEDASNPAS 476


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 18/59 (30%), Positives = 24/59 (40%)
 Frame = +1

Query: 316 PTTWRPCNTGTSDPRSWWEVTARCTRAPAGCTSARTPTGTTRGPSEVAFIGNFNTDXPS 492
           PTT   C T TS P +    T      P   TS+   T T   P+  +  G  ++  PS
Sbjct: 279 PTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSS---TSTPPPPASTSSTGTSSSPLPS 334


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 727 PPPXPPPPXXXXPXXXPP 780
           PPP PPPP        PP
Sbjct: 761 PPPPPPPPGVAGAGPPPP 778


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,351,379
Number of Sequences: 5004
Number of extensions: 44284
Number of successful extensions: 155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)