Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_N03
(871 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical pr... 31 0.81
Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical pr... 31 0.81
AC024810-19|AAF60770.1| 427|Caenorhabditis elegans Hypothetical... 30 2.5
Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical pr... 29 4.3
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 4.3
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 4.3
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 4.3
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 4.3
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 4.3
U13072-7|AAK31398.2| 382|Caenorhabditis elegans Nematode astaci... 29 5.7
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 23 6.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 23 6.7
U88170-4|AAB42245.2| 425|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 28 10.0
>Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical
protein F22G12.5 protein.
Length = 2396
Score = 31.5 bits (68), Expect = 0.81
Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Frame = -1
Query: 382 LPLPPTR-NEGPMSQYCKASMWL-----VWIFRTSSSQPASVLQKGVTVCWTMTRLTGRA 221
L LPPT N + C+ L ++ SSS P +V + TV ++TRL G
Sbjct: 620 LQLPPTTVNHRDLWIVCRVDRILSADTAAELYMKSSSDPKAVAKLQKTVSMSLTRLAGHR 679
Query: 220 RYDTCTGIKPSHCFLLTTSQSAAISVRSE-LRASASTTAEWRRAMSRSGA 74
+ T KP L + S S S L +S ST + W S+SGA
Sbjct: 680 QRFAWTA-KPLFPELRSNHSSTISSTTSPMLSSSTSTLSGW----SKSGA 724
>Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical
protein F22G12.5 protein.
Length = 2396
Score = 31.5 bits (68), Expect = 0.81
Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Frame = -1
Query: 382 LPLPPTR-NEGPMSQYCKASMWL-----VWIFRTSSSQPASVLQKGVTVCWTMTRLTGRA 221
L LPPT N + C+ L ++ SSS P +V + TV ++TRL G
Sbjct: 620 LQLPPTTVNHRDLWIVCRVDRILSADTAAELYMKSSSDPKAVAKLQKTVSMSLTRLAGHR 679
Query: 220 RYDTCTGIKPSHCFLLTTSQSAAISVRSE-LRASASTTAEWRRAMSRSGA 74
+ T KP L + S S S L +S ST + W S+SGA
Sbjct: 680 QRFAWTA-KPLFPELRSNHSSTISSTTSPMLSSSTSTLSGW----SKSGA 724
>AC024810-19|AAF60770.1| 427|Caenorhabditis elegans Hypothetical
protein Y54E10A.16a protein.
Length = 427
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = -3
Query: 278 RPAEGCDCVLDDDEAHGPRQVRHVHRDQTVPLLFTDDVAIGCYFCEKRAESEREYNCRVE 99
RP G +LD+ E GP +V +V+ D + D +G F + CRV+
Sbjct: 97 RPDRGKFTILDNAEVAGPEEVLNVNFDSEILQRIFSDPKLGIQFLARYGLIPNTRVCRVQ 156
>Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical
protein C15C6.3 protein.
Length = 541
Score = 29.1 bits (62), Expect = 4.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 727 PPPXPPPPXXXXPXXXPP 780
PPP PPPP P PP
Sbjct: 476 PPPPPPPPPENEPEEFPP 493
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.1 bits (62), Expect = 4.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 727 PPPXPPPPXXXXPXXXPP 780
PPP PPPP P PP
Sbjct: 63 PPPPPPPPPPMCPPPPPP 80
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +1
Query: 727 PPPXPPPPXXXXPXXXPPXXXXXXXPXXXXXXXXXXXXXXXXPPXXPP 870
PPP PPPP P PP P PP PP
Sbjct: 27 PPPCPPPP---PPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPP 71
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.1 bits (62), Expect = 4.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 727 PPPXPPPPXXXXPXXXPP 780
PPP PPPP P PP
Sbjct: 758 PPPPPPPPGGCPPPPPPP 775
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.1 bits (62), Expect = 4.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 727 PPPXPPPPXXXXPXXXPP 780
PPP PPPP P PP
Sbjct: 758 PPPPPPPPGGCPPPPPPP 775
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.1 bits (62), Expect = 4.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 727 PPPXPPPPXXXXPXXXPP 780
PPP PPPP P PP
Sbjct: 341 PPPPPPPPGGCPPPPPPP 358
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 29.1 bits (62), Expect = 4.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 727 PPPXPPPPXXXXPXXXPP 780
PPP PPPP P PP
Sbjct: 577 PPPPPPPPMLGGPPPPPP 594
>U13072-7|AAK31398.2| 382|Caenorhabditis elegans Nematode astacin
protease protein 7 protein.
Length = 382
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 298 SSSQPASVLQKGVTVC-WTMTRLTGRARYDTCTGIKPSHC 182
+S++P+S + +TVC WT R A Y + + P C
Sbjct: 340 NSNKPSSQCEDRITVCWWTADRCRSPAIYQVMSSLCPKTC 379
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 23.4 bits (48), Expect(2) = 6.6
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 727 PPPXPPPP 750
PPP PPPP
Sbjct: 307 PPPPPPPP 314
Score = 23.4 bits (48), Expect(2) = 6.6
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +1
Query: 733 PXPPPPXXXXPXXXPP 780
P PPPP P PP
Sbjct: 344 PPPPPPGMRYPGGMPP 359
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 23.4 bits (48), Expect(2) = 6.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 727 PPPXPPPP 750
PPP PPPP
Sbjct: 297 PPPPPPPP 304
Score = 23.4 bits (48), Expect(2) = 6.7
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +1
Query: 733 PXPPPPXXXXPXXXPP 780
P PPPP P PP
Sbjct: 334 PPPPPPGMRYPGGMPP 349
>U88170-4|AAB42245.2| 425|Caenorhabditis elegans Hypothetical
protein C10G11.6 protein.
Length = 425
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = -1
Query: 424 VCAPTCSQPEPSYTLPLPPTRNEGPMSQYCKASMWLVWIFRTSSSQPASVLQKGV 260
+ +P +P PS ++PLPP + P S Y ++ + ++S+S S L K +
Sbjct: 172 IVSPDVRRPPPSLSIPLPP-MHIPPPSVYFISTPSIYSTAKSSTSTVTSKLSKAI 225
>Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical
protein C09G5.6 protein.
Length = 948
Score = 27.9 bits (59), Expect = 10.0
Identities = 20/56 (35%), Positives = 24/56 (42%)
Frame = +2
Query: 152 SSRLRRRQ*KAMGRFDPGARVVPGAAREPRHRPAHSHTLLQDGRWLRGARAEYPDQ 319
SSR R+ + M R G R P AA +RP H GR +R YP Q
Sbjct: 123 SSRPRKPEPPTMPRTIQGFRAPPPAATST-YRPPHGSNYDNYGREPASSRRPYPPQ 177
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,537,394
Number of Sequences: 27780
Number of extensions: 317565
Number of successful extensions: 2347
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1960
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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