Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_N03
         (871 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    27   0.30 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.8  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   6.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   6.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   6.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   6.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   6.4  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +3

Query: 195 LIPVHVSYLARP-VSLVIVQHTVTPFCRTDAGCEELVRNIQTNHMEALQYWDIGPSFLVG 371
           ++ + V Y++ P +S+       TP  R  A  E+ +     N +   Q     P+FL  
Sbjct: 181 ILAIKVYYISCPEISVNFAHFPATPTGREVALIEQTIGTCVANAVVIEQ-----PTFLCK 235

Query: 372 GNGKVYEGSGWLH 410
           G+GK Y  SG  H
Sbjct: 236 GDGKWYLPSGGCH 248


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 727  PPPXPPPP 750
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -1

Query: 202  GIK--PSHCFLLTTSQSAAISVRSELRASASTTAEWRRAMSRSG 77
            G+K  P HC     +  A I++++ + +S S    WR     +G
Sbjct: 1165 GVKSAPIHCQTEQDAPEAPIAIKALVMSSESILVSWRPPSQPNG 1208


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 385 TLPLPPTRNEGPMSQY 338
           T+P+P   N+G ++QY
Sbjct: 55  TIPVPQAANKGMINQY 70


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -3

Query: 155 CYFCEKRAESEREYNC 108
           C  C++R E +  Y+C
Sbjct: 274 CSLCQRRFEEQGNYSC 289



 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 424 PTGTTRGPSEVAFIGN 471
           PTG T GP+E+    N
Sbjct: 414 PTGATTGPNEIVTCTN 429


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 424 PTGTTRGPSEVAFIGN 471
           PTG T GP+E+    N
Sbjct: 400 PTGATTGPNEIVTCTN 415


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 424 PTGTTRGPSEVAFIGN 471
           PTG T GP+E+    N
Sbjct: 434 PTGATTGPNEIVTCTN 449


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 424 PTGTTRGPSEVAFIGN 471
           PTG T GP+E+    N
Sbjct: 383 PTGATTGPNEIVTCTN 398


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,427
Number of Sequences: 438
Number of extensions: 3699
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)