Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_M24
         (910 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    25   0.82 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   3.3  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   7.6  

>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -3

Query: 182 SASTSSVLGASVALEASAHTGEDEGKQSQSHRWRS 78
           +  TS V   + +LEAS +     G   + H W++
Sbjct: 88  NGDTSQVDDQNESLEASVNENSKNGDDDEGHEWQA 122


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 779 SPXPXSAPXSXPXSPPP 829
           SP P   P S   SPPP
Sbjct: 266 SPYPMQRPKSASLSPPP 282


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +2

Query: 752 PPXQPXPLXSPXPXSAPXSXPXSPPP 829
           PP  P    +P   S   S   +PPP
Sbjct: 11  PPPAPQSAATPISSSGMTSPAAAPPP 36


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,370
Number of Sequences: 336
Number of extensions: 2056
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25341085
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)