Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_M23
         (891 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    40   0.085
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    39   0.20 
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    38   0.45 
UniRef50_Q7R5N4 Cluster: GLP_487_50358_53330; n=1; Giardia lambl...    33   9.8  

>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 39.9 bits (89), Expect = 0.085
 Identities = 17/19 (89%), Positives = 17/19 (89%)
 Frame = +1

Query: 385 DPDMIRYIDEXGQTTTXMQ 441
           DPDMIRYIDE GQTTT MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 38.7 bits (86), Expect = 0.20
 Identities = 23/58 (39%), Positives = 30/58 (51%)
 Frame = +2

Query: 536 IHFMFQVQGEVWEGFSALMNRPTXGXKRVAYWGALPVPRSLTPCARSFGCGEXVSAHS 709
           +H  F  + + W   S + +  T   + V    ALP+ RS T C RS GCG  VSAHS
Sbjct: 252 VHCPFSTR-DTWRA-SCIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHS 307


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 37.5 bits (83), Expect = 0.45
 Identities = 16/25 (64%), Positives = 19/25 (76%)
 Frame = +2

Query: 617 RVAYWGALPVPRSLTPCARSFGCGE 691
           R+   G +P+PRSLT  ARSFGCGE
Sbjct: 29  RICDTGDIPLPRSLTRYARSFGCGE 53


>UniRef50_Q7R5N4 Cluster: GLP_487_50358_53330; n=1; Giardia lamblia
            ATCC 50803|Rep: GLP_487_50358_53330 - Giardia lamblia
            ATCC 50803
          Length = 990

 Score = 33.1 bits (72), Expect = 9.8
 Identities = 22/75 (29%), Positives = 29/75 (38%)
 Frame = +2

Query: 581  SALMNRPTXGXKRVAYWGALPVPRSLTPCARSFGCGEXVSAHSKAGIRLSPXIRGITXXK 760
            SA  N    G  +  Y GA+  P    P + S+G G  VS +        P   G     
Sbjct: 889  SAGSNMGPYGAPQQGYSGAVSAP---APMSGSYGAGVPVSTYGSTPAPAGPGASGPYGAP 945

Query: 761  KTCDPKGXPKXPXNP 805
            +T +P G P    NP
Sbjct: 946  QTSNPYGAPAPASNP 960


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 608,584,521
Number of Sequences: 1657284
Number of extensions: 9441431
Number of successful extensions: 16498
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16493
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 80342087756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)