Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_M22
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...    62   8e-11
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    28   1.6  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    27   3.6  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   4.8  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    27   4.8  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    27   4.8  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    26   8.3  

>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 62.5 bits (145), Expect = 8e-11
 Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 15/167 (8%)
 Frame = +3

Query: 141 KVFNFGAGPAKLPEEVYEIIKNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLD 320
           +V NF AGPA +   V E    +  NF+  G+ + E SHRS     +    +   R L +
Sbjct: 6   EVVNFAAGPAAMITSVVEEFGKDFVNFQGLGMGVAEISHRSKQGSGIVTSAESNFRKLYN 65

Query: 321 VPDNYKVXXXXXXXXXXXXXVPLNLI---------SRTGTADYVVTGAWSXXXXXXXXXY 473
           +P+N+ +                N+          +++  A+Y++TGAWS          
Sbjct: 66  IPENFHILFMQGGGTEQFAACLYNVYAHHALKNGNAKSLVANYIITGAWSKKAYAEAERL 125

Query: 474 G-KVNLVLPPTD---KYEDIPD--QTKWNLDPNASYVHICTNETIHG 596
           G   ++ +   +   KY  +P+    K+  D   S V+ C NET+HG
Sbjct: 126 GFPCHVAVDMKELAGKYGSLPEDKDLKFTPDGETSLVYYCDNETVHG 172



 Score = 30.7 bits (66), Expect = 0.29
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 671 RKLMFQKFGVIYAGAQKNIGTLG 739
           RK+ F K  +I+AGAQKN G  G
Sbjct: 199 RKIDFTKHDIIFAGAQKNAGPAG 221



 Score = 30.3 bits (65), Expect = 0.39
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +1

Query: 595 GVEFDFIPDT--KGVPLIADMSSNIMSKKVDVSK 690
           GVEF+  P    KG   + D+SSN +S+K+D +K
Sbjct: 172 GVEFNEPPTNIPKGAIRVCDVSSNFISRKIDFTK 205


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 552 WDQGSILSDQVCLHIYLSVVAPNLLSHIFSPPW 454
           WD+  +L+++  L I L  +AP     +FSPPW
Sbjct: 275 WDRAELLANK--LGISLPKMAPLDFGDLFSPPW 305


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 677 TFFDIMFEDISAIKGTPFVS 618
           TF+DI+FED+  +  +PF S
Sbjct: 540 TFWDILFEDVPGVFQSPFQS 559


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 201  KNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLL 317
            +N+ +      +SLL  S  S++Y  L +   D+V N+L
Sbjct: 1197 RNQWSQVRALALSLLSDSLNSTSYRLLGISCSDMVSNIL 1235


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +3

Query: 201 KNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLDVPDNY 335
           +++ T ++ SG+  L T HR     KLN +   ++  +LD+ + +
Sbjct: 211 ESQSTMYKKSGLKTLVTLHRDLGIDKLNQDEVTIITAVLDLREKH 255


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 180 EEVYEIIKNELTNFENSGISLLETSHRSSTYMKLNVEIQDVV 305
           E V  +  N + +   + ++LL T H S T  KLNV   D++
Sbjct: 604 ESVDSVTCNYVLSSSKNPMNLLFTLHNSITDGKLNVHCNDII 645


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 396 LSLKEQLQIDQDPHQLKTALCSCPVHLISFAQ 301
           L+LK+ + I  + H L  A+CS     ISF Q
Sbjct: 352 LTLKDNICIIDEAHNLIDAICSMHSSSISFRQ 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,531,779
Number of Sequences: 5004
Number of extensions: 73776
Number of successful extensions: 220
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)