Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_M22
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0398 + 3092577-3093857                                           96   4e-20
09_03_0003 + 11396076-11396386,11398803-11398869,11399194-113996...    29   3.8  
08_02_0871 - 22075553-22075731,22075815-22076028,22076309-220763...    29   6.6  
03_06_0756 - 36032432-36033871                                         28   8.7  

>03_01_0398 + 3092577-3093857
          Length = 426

 Score = 95.9 bits (228), Expect = 4e-20
 Identities = 53/153 (34%), Positives = 79/153 (51%), Gaps = 2/153 (1%)
 Frame = +3

Query: 144 VFNFGAGPAKLPEEVYEIIKNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLDV 323
           V+NF AGPA LP  V +  + EL ++  SG+S++E SHR   +     + +  +R LL V
Sbjct: 65  VYNFAAGPATLPLSVLQRAQAELVDYRGSGMSIMEMSHRGKEFDAAIKKAEADLRALLAV 124

Query: 324 PDNYKVXXXXXXXXXXXXXVPLNL-ISRTGTADYVVTGAWSXXXXXXXXXYGKVNLVLPP 500
           PD ++V              PLNL  S +  AD+VV+G+WS         +   ++    
Sbjct: 125 PDTHEVLFLQGGATSQFAAAPLNLCASPSDPADFVVSGSWSDKAFKEAKKFSAASVAWSG 184

Query: 501 TD-KYEDIPDQTKWNLDPNASYVHICTNETIHG 596
            D KY  +P       +P A ++HIC+NETIHG
Sbjct: 185 KDGKYTSLPPFDAIEQNPEARFLHICSNETIHG 217



 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
 Frame = +1

Query: 595 GVEFDFIPDTKGVP--LIADMSSNIMSKKVDVSKVWGDICWCSKEYWYSGVXLSLLKRSF 768
           GVEF   P+ K     L+ADMSSN  SK VDVS+         K    SGV ++++++  
Sbjct: 217 GVEFKDYPEPKNKSGILVADMSSNFCSKPVDVSRFGLIYAGAQKNVGPSGVTIAIVRKDL 276

Query: 769 ESGSTDMXLFIXLD--SYYNRINL-NTPPMLALYI 864
             GS      + LD  ++ +  +L NTPP  A+YI
Sbjct: 277 -VGSAQPITPVMLDYKTHADNASLYNTPPCFAIYI 310


>09_03_0003 +
           11396076-11396386,11398803-11398869,11399194-11399698,
           11400903-11401038,11401186-11401257,11401891-11401923,
           11401924-11402047,11402387-11402437,11403437-11403563,
           11404230-11404298,11404369-11404486,11404755-11405151
          Length = 669

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 486 LVLPPTDKYEDIP-DQTKWNLDPNASYVHICTNETI 590
           L+LPP  +Y D P D+  W    ++  ++I TN+TI
Sbjct: 120 LLLPPFQRYPDDPYDRLWWPWQGSSRLLNISTNQTI 155


>08_02_0871 -
           22075553-22075731,22075815-22076028,22076309-22076351,
           22076557-22076616,22077522-22077593,22078163-22078368,
           22078782-22078837,22079540-22079777,22079908-22080081,
           22080157-22080292,22080822-22080853,22081563-22081619,
           22081713-22081965,22082057-22082145,22082590-22082643,
           22084016-22084207,22085338-22085499
          Length = 738

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = -1

Query: 221 KICQFILNNFIDF--FWQFSRSSAKIKHFRHFHLFIYLINSYTTLFYQTTLSFSDVSQYD 48
           KI Q + +  I +  +W++S SS    HFRH  L   + +S +  +    L+++   QY 
Sbjct: 128 KIAQSLQSKGISYIMYWRYSLSSYAASHFRH-SLLSVVRSSCSHAWDAFQLAYASFEQYC 186

Query: 47  VKS 39
           V++
Sbjct: 187 VRN 189


>03_06_0756 - 36032432-36033871
          Length = 479

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = -2

Query: 520 MSSYLSVGGSTKFTFPYFFASLAALADHAPVT 425
           + SYLS  G    T P  FAS  ALA H P+T
Sbjct: 162 LKSYLSAQG---VTLPTLFASALALALHVPLT 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,222,248
Number of Sequences: 37544
Number of extensions: 410828
Number of successful extensions: 894
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)