Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_M22
         (893 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30238| Best HMM Match : No HMM Matches (HMM E-Value=.)              88   1e-17
SB_24860| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_14966| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00043)         30   2.9  
SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  
SB_28618| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_38059| Best HMM Match : Zfx_Zfy_act (HMM E-Value=2.6)               28   8.9  

>SB_30238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 87.8 bits (208), Expect = 1e-17
 Identities = 36/62 (58%), Positives = 45/62 (72%)
 Frame = +3

Query: 408 GTADYVVTGAWSXXXXXXXXXYGKVNLVLPPTDKYEDIPDQTKWNLDPNASYVHICTNET 587
           G+ADY+VTGAWS         YGKVNLVLP T  Y+ IPD ++W L+P+ASYV+ C NET
Sbjct: 42  GSADYIVTGAWSAKAVKEAEKYGKVNLVLPKTSTYDSIPDPSQWTLNPDASYVYYCENET 101

Query: 588 IH 593
           +H
Sbjct: 102 VH 103



 Score = 41.9 bits (94), Expect = 7e-04
 Identities = 19/36 (52%), Positives = 24/36 (66%)
 Frame = +3

Query: 141 KVFNFGAGPAKLPEEVYEIIKNELTNFENSGISLLE 248
           KV NF  GPAKLPE V +  + E  N+ N GIS++E
Sbjct: 5   KVINFAPGPAKLPEVVLKKAQEEFLNYGNLGISVME 40


>SB_24860| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +1

Query: 634 PLIADMSSNIMS-KKVDVSKVWGDICWCSKEYWYSGVXLS---LLKRSFESGSTDMXLFI 801
           P +A+ +   ++  + D+ KVW    +CS  + YS V +    + ++ F  GS DM  F 
Sbjct: 62  PRLANFTDKTITFTRGDIEKVWRPDTYCSNAHAYSDVDVLYHWVSQKEFSVGSRDMAQFY 121

Query: 802 XL 807
            L
Sbjct: 122 VL 123


>SB_14966| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00043)
          Length = 137

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +1

Query: 634 PLIADMSSNIMS-KKVDVSKVWGDICWCSKEYWYSGVXLS---LLKRSFESGSTDMXLFI 801
           P +A+ +   ++  + D+ KVW    +CS  + YS V +    + ++ F  GS DM  F 
Sbjct: 62  PRLANFTDKTITFTRGDIEKVWRPDTYCSNAHAYSDVDVLYHWVSQKEFSVGSRDMAQFY 121

Query: 802 XL 807
            L
Sbjct: 122 VL 123


>SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 947

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +1

Query: 667 SKKVDVSKVWGDICWCSKEYWYSGVXLSLLKRSFESGSTDMXLFIXLDSY 816
           S+ +  SK+W   CW +++ W       L+   F++ S    L++ +D Y
Sbjct: 67  SRDLRPSKIWDFGCWITQQRWTEVFDKQLVSEKFQAFSD--VLYMAVDKY 114


>SB_28618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 408 QFWILSLKEQLQIDQDPHQLKTAL-CSCPVHLISFAQHP 295
           +F  +S+ +  ++D  PHQ  TAL  S P  LI  + HP
Sbjct: 7   EFPTISISDLTELDLQPHQTPTALENSNPSPLIPASHHP 45


>SB_38059| Best HMM Match : Zfx_Zfy_act (HMM E-Value=2.6)
          Length = 722

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +3

Query: 171 KLPE-EVYEIIKNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLDVPDNYKV 341
           K PE + +   ++   N+E    ++ +T     T ++LN EI D V+N  +   NY++
Sbjct: 197 KEPEYDTFNNFEDHQLNYEIMSEAMHDTDGPQFTDVQLNYEIMDKVKNNEETHPNYEI 254


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,139,426
Number of Sequences: 59808
Number of extensions: 503881
Number of successful extensions: 913
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2562198215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)