Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_M22
         (893 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35630.1 68417.m05060 phosphoserine aminotransferase, chlorop...   115   4e-26
At2g17630.1 68415.m02039 phosphoserine aminotransferase, putativ...   104   9e-23
At1g17830.1 68414.m02207 expressed protein                             31   0.78 
At3g08800.1 68416.m01022 expressed protein                             29   5.5  

>At4g35630.1 68417.m05060 phosphoserine aminotransferase,
           chloroplast (PSAT) identical to Phosphoserine
           aminotransferase, chloroplast precursor (PSAT)
           (SP:Q96255)[Arabidopsis thaliana]; contains TIGRFAM
           TIGR01364: phosphoserine aminotransferase; contains Pfam
           PF00266: aminotransferase, class V
          Length = 430

 Score =  115 bits (277), Expect = 4e-26
 Identities = 56/153 (36%), Positives = 82/153 (53%), Gaps = 1/153 (0%)
 Frame = +3

Query: 141 KVFNFGAGPAKLPEEVYEIIKNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLD 320
           +VFNF AGPA LPE V    + +L N+  SG+S++E SHR   ++ +  + +  +R LL+
Sbjct: 72  RVFNFAAGPATLPENVLLKAQADLYNWRGSGMSVMEMSHRGKEFLSIIQKAESDLRQLLE 131

Query: 321 VPDNYKVXXXXXXXXXXXXXVPLNLISRTGTADYVVTGAWSXXXXXXXXXYGKVNLVLP- 497
           +P  Y V             +PLNL     T D+VVTG+W          Y K N++   
Sbjct: 132 IPQEYSVLFLQGGATTQFAALPLNLCKSDDTVDFVVTGSWGDKAVKEAKKYCKTNVIWSG 191

Query: 498 PTDKYEDIPDQTKWNLDPNASYVHICTNETIHG 596
            ++KY  +P   +    P+A Y+HIC NETIHG
Sbjct: 192 KSEKYTKVPSFEELEQTPDAKYLHICANETIHG 224



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
 Frame = +1

Query: 595 GVEFDFIPDTKGVPLIADMSSNIMSKKVDVSKVWGDICWCSKEYWYSGVXLSLLKRSFES 774
           GVEF   P  K   L+ADMSSN  SK VDVSK         K    SGV + ++++    
Sbjct: 224 GVEFKDYPVPKNGFLVADMSSNFCSKPVDVSKFGVIYGGAQKNVGPSGVTIVIIRKDLIG 283

Query: 775 GSTDMXLFIXLDSYYNRIN---LNTPPMLALYI 864
            + D+   + LD   +  N    NTPP   +Y+
Sbjct: 284 NAQDITP-VMLDYKIHDENSSLYNTPPCFGIYM 315


>At2g17630.1 68415.m02039 phosphoserine aminotransferase, putative
           similar to Phosphoserine aminotransferase, chloroplast
           precursor (PSAT) (SP:Q96255) [Arabidopsis thaliana];
           contains TIGRFAM TIGR01364: phosphoserine
           aminotransferase; contains Pfam PF00266:
           aminotransferase, class V
          Length = 422

 Score =  104 bits (249), Expect = 9e-23
 Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 1/153 (0%)
 Frame = +3

Query: 141 KVFNFGAGPAKLPEEVYEIIKNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLD 320
           +V NF AGPA LPE V    +++L N+  SG+S++E SHR   ++ +  + +  +R LL+
Sbjct: 62  RVINFAAGPAALPENVLLKAQSDLYNWRGSGMSVMEMSHRGKEFLSIIQKAESDLRQLLE 121

Query: 321 VPDNYKVXXXXXXXXXXXXXVPLNLISRTGTADYVVTGAWSXXXXXXXXXYGKVNLVLP- 497
           +P  Y V             +PLNL     + DY+VTG+W          Y    ++   
Sbjct: 122 IPSEYSVLFLQGGATTQFAALPLNLCKSDDSVDYIVTGSWGDKAFKEAKKYCNPKVIWSG 181

Query: 498 PTDKYEDIPDQTKWNLDPNASYVHICTNETIHG 596
            ++KY  +P         +A Y+HIC NETIHG
Sbjct: 182 KSEKYTKVPTFDGLEQSSDAKYLHICANETIHG 214



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 35/96 (36%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
 Frame = +1

Query: 595 GVEFDFIP---DTKGVPLIADMSSNIMSKKVDVSKVWGDICWCSKEYWYSGVXLSLLKRS 765
           GVEF   P   +  GV LIADMSSN  SK VDVSK         K    SGV + ++++ 
Sbjct: 214 GVEFKDYPLVENPDGV-LIADMSSNFCSKPVDVSKFGVIYAGAQKNVGPSGVTIVIIRKD 272

Query: 766 FESGSTDMXLFIXLDSYYNRIN---LNTPPMLALYI 864
               + D+   + LD   +  N    NTPP   +Y+
Sbjct: 273 LIGNARDITP-VMLDYKIHDENSSLYNTPPCFGIYM 307



 Score = 36.3 bits (80), Expect = 0.027
 Identities = 15/25 (60%), Positives = 18/25 (72%)
 Frame = +2

Query: 665 CRRKLMFQKFGVIYAGAQKNIGTLG 739
           C + +   KFGVIYAGAQKN+G  G
Sbjct: 239 CSKPVDVSKFGVIYAGAQKNVGPSG 263


>At1g17830.1 68414.m02207 expressed protein
          Length = 337

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 667 SKKVDVSKVWGDICWCSKEYWYSGVXLSLLKRSFESGSTDMXLFIXLDSYY 819
           +K   +S++  D+  C  E W     +  L RS  SGS+ +   +  DS Y
Sbjct: 104 NKSTAISRIHSDVVDCESECWSDDSEIEKLSRSMSSGSSKIWDSVSDDSGY 154


>At3g08800.1 68416.m01022 expressed protein
          Length = 936

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 622 TKGVPLIADMSSNIMSKKVDVSKVWGDICWCSKE 723
           T+ V L++D   ++ S  V    VWG +   SKE
Sbjct: 203 TRAVELLSDAEDSVRSSAVRAVSVWGKVMIASKE 236


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,734,374
Number of Sequences: 28952
Number of extensions: 357857
Number of successful extensions: 875
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)