Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_M20
(875 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50311-12|AAA92315.1| 169|Caenorhabditis elegans Hypothetical p... 38 0.007
U42830-3|AAC48275.1| 195|Caenorhabditis elegans Hypothetical pr... 33 0.20
Z81573-3|CAB04624.3| 398|Caenorhabditis elegans Hypothetical pr... 32 0.62
Z70212-9|CAA94168.1| 491|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z50742-6|CAA90619.1| 491|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z83232-3|CAE46672.1| 381|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z83232-2|CAB05754.2| 420|Caenorhabditis elegans Hypothetical pr... 29 5.8
U07628-1|AAA17738.1| 515|Caenorhabditis elegans APX-1 protein. 28 7.6
AF101319-2|AAC69353.4| 515|Caenorhabditis elegans Anterior phar... 28 7.6
>U50311-12|AAA92315.1| 169|Caenorhabditis elegans Hypothetical
protein C25E10.10 protein.
Length = 169
Score = 38.3 bits (85), Expect = 0.007
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +2
Query: 149 PTRKCP-KGEHSVLYCPQMAEPDC--ENPEVHDFVDHVGPCDVPQCFCDRPNVRNTKTGK 319
P RK +G+ + C EP C ENPE D V C C C + VR++ TGK
Sbjct: 71 PIRKPECEGDEELKACGSACEPTCDNENPEC-DLV-----CMTNVCQCKKGLVRDSATGK 124
Query: 320 CVPESEC 340
CV +++C
Sbjct: 125 CVEKNKC 131
>U42830-3|AAC48275.1| 195|Caenorhabditis elegans Hypothetical
protein C53B7.2 protein.
Length = 195
Score = 33.5 bits (73), Expect = 0.20
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 191 CPQMAEPDCENPEVHDFVDHVGPCDVPQCFCDRPNVRNTKTGKCVPESEC 340
C QM P CE+P VD C P C C P + + +C+P + C
Sbjct: 38 CTQMCPPTCESPNPQCRVD----CTRPSCTC-LPGHVYSNSRQCIPANSC 82
>Z81573-3|CAB04624.3| 398|Caenorhabditis elegans Hypothetical
protein M02G9.2 protein.
Length = 398
Score = 31.9 bits (69), Expect = 0.62
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Frame = +2
Query: 95 IVLLFVVAAVGYVTGQHFPTR-KCPKGEHSVLYCPQMAEPDCENPEVHDFVDHVGPCDVP 271
+V FV+A+V + + C GE C M P+ ++ + P P
Sbjct: 7 LVAFFVIASVQAIPQRTKRQNCDCTPGEAPKCGCQVMPTPEIGGGQM---ICTCSPPVPP 63
Query: 272 QCFCDRPNVRNTKTGKCVPESEC**NCVN 358
+C C NVRN TG +P NCV+
Sbjct: 64 KCVCTEGNVRNIITGPSLPALFKPYNCVS 92
>Z70212-9|CAA94168.1| 491|Caenorhabditis elegans Hypothetical
protein R04D3.1 protein.
Length = 491
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 83 MKSFIVLLFVVAAVGYVTGQHFPTRKCPKG 172
M ++L F VA VGY+ + RK PKG
Sbjct: 1 MSPLLILAFFVATVGYLVHFYLKVRKYPKG 30
>Z50742-6|CAA90619.1| 491|Caenorhabditis elegans Hypothetical
protein R04D3.1 protein.
Length = 491
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 83 MKSFIVLLFVVAAVGYVTGQHFPTRKCPKG 172
M ++L F VA VGY+ + RK PKG
Sbjct: 1 MSPLLILAFFVATVGYLVHFYLKVRKYPKG 30
>Z83232-3|CAE46672.1| 381|Caenorhabditis elegans Hypothetical
protein K04B12.2b protein.
Length = 381
Score = 28.7 bits (61), Expect = 5.8
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 70 ENVSNEKFYCIVVCCGSCRLRHRATFS 150
+N+ +E+F+C+ CC RL T++
Sbjct: 196 KNLLDEEFFCLAPCCSGMRLFQAETYT 222
>Z83232-2|CAB05754.2| 420|Caenorhabditis elegans Hypothetical
protein K04B12.2a protein.
Length = 420
Score = 28.7 bits (61), Expect = 5.8
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 70 ENVSNEKFYCIVVCCGSCRLRHRATFS 150
+N+ +E+F+C+ CC RL T++
Sbjct: 235 KNLLDEEFFCLAPCCSGMRLFQAETYT 261
>U07628-1|AAA17738.1| 515|Caenorhabditis elegans APX-1 protein.
Length = 515
Score = 28.3 bits (60), Expect = 7.6
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = +2
Query: 176 HSVLYCPQ-MAEPDCENPEVHDFVDHVGPCDVP-QCFCDRPNVRNTKTGKCVPESEC-** 346
H V C + DC NP + G C P QC C T+ +C+P + C
Sbjct: 158 HGVRRCSAGWSGEDCSNPICAGGCSNRGRCVAPNQCSC-ADGFNGTRCEQCLPRAGCVNG 216
Query: 347 NCVN 358
+CVN
Sbjct: 217 DCVN 220
>AF101319-2|AAC69353.4| 515|Caenorhabditis elegans Anterior pharynx
in excess protein1 protein.
Length = 515
Score = 28.3 bits (60), Expect = 7.6
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = +2
Query: 176 HSVLYCPQ-MAEPDCENPEVHDFVDHVGPCDVP-QCFCDRPNVRNTKTGKCVPESEC-** 346
H V C + DC NP + G C P QC C T+ +C+P + C
Sbjct: 158 HGVRRCSAGWSGEDCSNPICAGGCSNRGRCVAPNQCSC-ADGFNGTRCEQCLPRAGCVNG 216
Query: 347 NCVN 358
+CVN
Sbjct: 217 DCVN 220
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,601,345
Number of Sequences: 27780
Number of extensions: 298183
Number of successful extensions: 640
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -