Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_M19
         (854 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    29   0.047
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    25   0.58 
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    25   0.76 
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    23   4.1  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   4.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.4  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   5.4  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    22   7.1  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   7.1  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   7.1  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 29.1 bits (62), Expect = 0.047
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +3

Query: 585 PXXNPPXPPPPPPXXPXXXXPPPPXPPPXPXPP 683
           P    P P  PP        PP P  PP P PP
Sbjct: 155 PSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPP 187



 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 527 PPPPXXPPPPXXPPXPP 577
           PP P  PP P  P  PP
Sbjct: 175 PPLPQVPPLPLPPIFPP 191



 Score = 23.4 bits (48), Expect = 2.3
 Identities = 15/53 (28%), Positives = 15/53 (28%)
 Frame = +2

Query: 647 PPXXXPPPXXPXPPPXXPXXPPXPPPPPXXXPPXXXXPPPXXXXPPXPPPXPP 805
           PP        P   P      P P  PP         P P     P PP  PP
Sbjct: 139 PPGNVLNLTMPKYEPNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPP 191



 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/37 (35%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
 Frame = +2

Query: 530 PPPXXPPPPXX----PPXPPXXPXXXPPXPPPPPXXP 628
           P P  PP        PP P   P   PP  PP    P
Sbjct: 160 PGPALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMINP 196


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 807 GGGXGGGXGGXXXXGGG 757
           GGG GGG  G    GGG
Sbjct: 92  GGGRGGGRDGDRGDGGG 108



 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -2

Query: 688 GXGGXGXGGGXGGGGXXXXGXXGG 617
           G      GGG GGG     G  GG
Sbjct: 85  GENNDDSGGGRGGGRDGDRGDGGG 108


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +3

Query: 585 PXXNPPXPPPPPPXXPXXXXPPPPXPPPXPXPP 683
           P    P P  PP         P P  PP P PP
Sbjct: 155 PSIIDPGPALPPAGFLCNNYLPLPQVPPLPLPP 187


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +3

Query: 804 PPXXXXAXPXPXPPPPP 854
           PP      P   PPPPP
Sbjct: 202 PPTEDCDVPSTIPPPPP 218



 Score = 21.4 bits (43), Expect = 9.4
 Identities = 14/53 (26%), Positives = 14/53 (26%)
 Frame = +2

Query: 527 PPPPXXPPPPXXPPXPPXXPXXXPPXPPPPPXXPXXXXXXPPXXXPPPXXPXP 685
           PP      P   PP PP         P   P         PP   P P    P
Sbjct: 202 PPTEDCDVPSTIPPPPPEEDDDSN-IPQNNPKNKQHNFNLPPGAIPVPDKNRP 253


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 594 NPPXPPPPP 620
           N P PPPPP
Sbjct: 729 NAPPPPPPP 737



 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 594 NPPXPPPPPP 623
           N   PPPPPP
Sbjct: 728 NNAPPPPPPP 737


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +1

Query: 688  PXXXPXXPXPPPPPXXXPPPXP 753
            P   P    PP PP    PP P
Sbjct: 1367 PEWQPTEWHPPIPPTSEKPPLP 1388



 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/26 (34%), Positives = 9/26 (34%)
 Frame = +2

Query: 530  PPPXXPPPPXXPPXPPXXPXXXPPXP 607
            PPP    P    P  P  P    P P
Sbjct: 1087 PPPAVVMPEVDKPSQPCEPGQYVPDP 1112



 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +3

Query: 651  PPXPPPXPXPPXP 689
            PP PP    PP P
Sbjct: 1376 PPIPPTSEKPPLP 1388


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 698 PXXPPXPPPPP 730
           P  PP P PPP
Sbjct: 95  PTTPPTPSPPP 105


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +3

Query: 594 NPPXPPPPPPXXPXXXXPPPPXP 662
           NPP P P P        P PP P
Sbjct: 249 NPPTPKPRPTKV-SRRKPRPPRP 270


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 645 PPPPXPPPXPXP 680
           PP P P P P P
Sbjct: 392 PPEPVPTPEPQP 403


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/25 (36%), Positives = 9/25 (36%)
 Frame = +2

Query: 719 PPPPXXXPPXXXXPPPXXXXPPXPP 793
           PP     PP    PP     P  PP
Sbjct: 61  PPHHYGGPPSGGQPPQGMPYPRFPP 85


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,895
Number of Sequences: 336
Number of extensions: 6421
Number of successful extensions: 44
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23659332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)